RNA id: trnas-gcu-17


Basic Information

Item Value
RNA id trnas-gcu-17
length 82
RNA type mRNA
GC content 0.52
exon number 1
gene id trnas-gcu-17
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43356858 ~ 43356939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtggccgagtggttaaggtgatgaactgctaatccattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477906 lncRNA upstream 3228 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 25481 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 27911 43328626 ~ 43328947 (+) True G1295176
TU1477737 lncRNA upstream 37475 43279935 ~ 43319383 (+) True G1295025
TU1477735 lncRNA upstream 79219 43275609 ~ 43277639 (+) True G1295023
TU1477935 lncRNA downstream 69903 43426842 ~ 43457776 (+) True G1295208
TU1477907 lncRNA downstream 152162 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1478031 lncRNA downstream 166879 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 184334 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 191853 43548792 ~ 43549416 (+) True G1295316
trnas-gcu-16 mRNA upstream 1573 43355204 ~ 43355285 (+) True trnas-gcu-16
trnas-gcu-15 mRNA upstream 2125 43354652 ~ 43354733 (+) True trnas-gcu-15
trnas-gcu-14 mRNA upstream 7573 43349204 ~ 43349285 (+) True trnas-gcu-14
trnas-gcu-13 mRNA upstream 8125 43348652 ~ 43348733 (+) True trnas-gcu-13
trnas-gcu-12 mRNA upstream 14706 43342071 ~ 43342152 (+) True trnas-gcu-12
trnas-gcu-18 mRNA downstream 1703 43358642 ~ 43358723 (+) True trnas-gcu-18
trnas-gcu-19 mRNA downstream 2686 43359625 ~ 43359706 (+) True trnas-gcu-19
trnas-gcu-20 mRNA downstream 7465 43364404 ~ 43364485 (+) True trnas-gcu-20
trnas-gcu-21 mRNA downstream 9010 43365949 ~ 43366030 (+) True trnas-gcu-21
trnas-gcu-22 mRNA downstream 10077 43367016 ~ 43367097 (+) True trnas-gcu-22
TU1476968 other upstream 588921 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1447247 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1768714 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1768771 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3226124 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 239985 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 559239 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 672497 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 964564 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1190240 44547179 ~ 44581048 (+) True G1296266

Expression Profile