RNA id: trnas-gcu-74



Basic Information


Item Value
RNA id trnas-gcu-74
length 82
RNA type mRNA
GC content 0.54
exon number 1
gene id trnas-gcu-74
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43425577 ~ 43425658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatgaggtggccgagtggttaaggcgatggactgctaatccattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1477906 lncRNA upstream 71947 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 94200 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 96630 43328626 ~ 43328947 (+) True G1295176
TU1477737 lncRNA upstream 106194 43279935 ~ 43319383 (+) True G1295025
TU1477735 lncRNA upstream 147938 43275609 ~ 43277639 (+) True G1295023
TU1477935 lncRNA downstream 1184 43426842 ~ 43457776 (+) True G1295208
TU1477907 lncRNA downstream 83443 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1478031 lncRNA downstream 98160 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 115615 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 123134 43548792 ~ 43549416 (+) True G1295316
trnas-gcu-73 mRNA upstream 481 43425015 ~ 43425096 (+) True trnas-gcu-73
trnas-gcu-72 mRNA upstream 1349 43424147 ~ 43424228 (+) True trnas-gcu-72
trnas-gcu-71 mRNA upstream 2468 43423028 ~ 43423109 (+) True trnas-gcu-71
trnas-gcu-70 mRNA upstream 3030 43422466 ~ 43422547 (+) True trnas-gcu-70
trnas-gcu-69 mRNA upstream 4147 43421349 ~ 43421430 (+) True trnas-gcu-69
trnas-gcu-75 mRNA downstream 994 43426652 ~ 43426733 (+) True trnas-gcu-75
trnas-gcu-76 mRNA downstream 1556 43427214 ~ 43427295 (+) True trnas-gcu-76
trnas-gcu-77 mRNA downstream 2118 43427776 ~ 43427857 (+) True trnas-gcu-77
trnas-gcu-78 mRNA downstream 2680 43428338 ~ 43428419 (+) True trnas-gcu-78
trnas-gcu-79 mRNA downstream 3242 43428900 ~ 43428981 (+) True trnas-gcu-79
TU1476968 other upstream 657640 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1515966 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1837433 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1837490 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3294843 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 171266 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 490520 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 603778 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 895845 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1121521 44547179 ~ 44581048 (+) True G1296266