RNA id: trnas-gcu-150


Basic Information

Item Value
RNA id trnas-gcu-150
length 82
RNA type mRNA
GC content 0.54
exon number 1
gene id trnas-gcu-150
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43501990 ~ 43502071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtggccgagtggttaaggcgatggactgctaatccattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477935 lncRNA upstream 44214 43426842 ~ 43457776 (+) True G1295208
TU1477906 lncRNA upstream 148360 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 170613 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 173043 43328626 ~ 43328947 (+) True G1295176
TU1477737 lncRNA upstream 182607 43279935 ~ 43319383 (+) True G1295025
TU1477907 lncRNA downstream 7030 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1478031 lncRNA downstream 21747 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 39202 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 46721 43548792 ~ 43549416 (+) True G1295316
TU1478088 lncRNA downstream 82213 43584284 ~ 43584574 (+) True G1295346
trnas-gcu-149 mRNA upstream 1038 43500871 ~ 43500952 (+) True trnas-gcu-149
trnas-gcu-148 mRNA upstream 2495 43499414 ~ 43499495 (+) True trnas-gcu-148
trnas-gcu-147 mRNA upstream 3057 43498852 ~ 43498933 (+) True trnas-gcu-147
trnas-gcu-146 mRNA upstream 3619 43498290 ~ 43498371 (+) True trnas-gcu-146
trnas-gcu-145 mRNA upstream 5076 43496833 ~ 43496914 (+) True trnas-gcu-145
trnas-gcu-151 mRNA downstream 2487 43504558 ~ 43504639 (+) True trnas-gcu-151
trnas-gcu-152 mRNA downstream 4500 43506571 ~ 43506652 (+) True trnas-gcu-152
trnas-gcu-153 mRNA downstream 5062 43507133 ~ 43507214 (+) True trnas-gcu-153
trnas-gcu-154 mRNA downstream 5624 43507695 ~ 43507776 (+) True trnas-gcu-154
trnas-gcu-155 mRNA downstream 6186 43508257 ~ 43508338 (+) True trnas-gcu-155
TU1476968 other upstream 734053 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1592379 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1913846 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1913903 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3371256 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 94853 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 414107 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 527365 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 819432 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1045108 44547179 ~ 44581048 (+) True G1296266