RNA id: trnas-gcu-154


Basic Information

Item Value
RNA id trnas-gcu-154
length 82
RNA type mRNA
GC content 0.52
exon number 1
gene id trnas-gcu-154
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43507695 ~ 43507776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtggctgagtggttaaggcgatggactgctaatccattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477935 lncRNA upstream 49919 43426842 ~ 43457776 (+) True G1295208
TU1477906 lncRNA upstream 154065 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 176318 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 178748 43328626 ~ 43328947 (+) True G1295176
TU1477737 lncRNA upstream 188312 43279935 ~ 43319383 (+) True G1295025
TU1477907 lncRNA downstream 1325 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1478031 lncRNA downstream 16042 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 33497 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 41016 43548792 ~ 43549416 (+) True G1295316
TU1478088 lncRNA downstream 76508 43584284 ~ 43584574 (+) True G1295346
trnas-gcu-153 mRNA upstream 481 43507133 ~ 43507214 (+) True trnas-gcu-153
trnas-gcu-152 mRNA upstream 1043 43506571 ~ 43506652 (+) True trnas-gcu-152
trnas-gcu-151 mRNA upstream 3056 43504558 ~ 43504639 (+) True trnas-gcu-151
trnas-gcu-150 mRNA upstream 5624 43501990 ~ 43502071 (+) True trnas-gcu-150
trnas-gcu-149 mRNA upstream 6743 43500871 ~ 43500952 (+) True trnas-gcu-149
trnas-gcu-155 mRNA downstream 481 43508257 ~ 43508338 (+) True trnas-gcu-155
trnas-gcu-156 mRNA downstream 1599 43509375 ~ 43509456 (+) True trnas-gcu-156
trnas-gcu-157 mRNA downstream 2676 43510452 ~ 43510533 (+) False trnas-gcu-157
trnas-gcu-158 mRNA downstream 3238 43511014 ~ 43511095 (+) True trnas-gcu-158
trnas-gcu-159 mRNA downstream 4357 43512133 ~ 43512214 (+) True trnas-gcu-159
TU1476968 other upstream 739758 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1598084 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1919551 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1919608 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3376961 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 89148 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 408402 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 521660 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 813727 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1039403 44547179 ~ 44581048 (+) True G1296266