RNA id: trnas-gcu-159


Basic Information

Item Value
RNA id trnas-gcu-159
length 82
RNA type mRNA
GC content 0.54
exon number 1
gene id trnas-gcu-159
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43512133 ~ 43512214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtggccgagtggttaaggcgatggactgctaatccattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477907 lncRNA upstream 1679 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1477935 lncRNA upstream 54357 43426842 ~ 43457776 (+) True G1295208
TU1477906 lncRNA upstream 158503 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 180756 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 183186 43328626 ~ 43328947 (+) True G1295176
TU1478031 lncRNA downstream 11604 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 29059 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 36578 43548792 ~ 43549416 (+) True G1295316
TU1478088 lncRNA downstream 72070 43584284 ~ 43584574 (+) True G1295346
TU1478071 lncRNA downstream 74711 43586925 ~ 43588112 (+) True G1295329
trnas-gcu-158 mRNA upstream 1038 43511014 ~ 43511095 (+) True trnas-gcu-158
trnas-gcu-157 mRNA upstream 1600 43510452 ~ 43510533 (+) False trnas-gcu-157
trnas-gcu-156 mRNA upstream 2677 43509375 ~ 43509456 (+) True trnas-gcu-156
trnas-gcu-155 mRNA upstream 3795 43508257 ~ 43508338 (+) True trnas-gcu-155
trnas-gcu-154 mRNA upstream 4357 43507695 ~ 43507776 (+) True trnas-gcu-154
trnas-gcu-160 mRNA downstream 1037 43513251 ~ 43513332 (+) True trnas-gcu-160
trnas-gcu-161 mRNA downstream 2494 43514708 ~ 43514789 (+) True trnas-gcu-161
trnas-gcu-162 mRNA downstream 4725 43516939 ~ 43517020 (+) True trnas-gcu-162
XM_021563274.2 mRNA downstream 17788 43530002 ~ 43534234 (+) True LOC110490104
XM_021563276.2 mRNA downstream 129167 43641381 ~ 43692014 (+) False LOC110490107
TU1476968 other upstream 744196 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1602522 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1923989 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1924046 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3381399 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 84710 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 403964 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 517222 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 809289 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1034965 44547179 ~ 44581048 (+) True G1296266