RNA id: trnas-gcu-162


Basic Information

Item Value
RNA id trnas-gcu-162
length 82
RNA type mRNA
GC content 0.54
exon number 1
gene id trnas-gcu-162
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43516939 ~ 43517020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacgaggtggccgagtggttaaggcgatggactgctaatctattgtgctctgcatgcatgggttcgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477907 lncRNA upstream 6485 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1477935 lncRNA upstream 59163 43426842 ~ 43457776 (+) True G1295208
TU1477906 lncRNA upstream 163309 43347076 ~ 43353630 (+) True G1295185
TU1477898 lncRNA upstream 185562 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 187992 43328626 ~ 43328947 (+) True G1295176
TU1478031 lncRNA downstream 6798 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 24253 43541273 ~ 43541595 (+) True G1295306
TU1478058 lncRNA downstream 31772 43548792 ~ 43549416 (+) True G1295316
TU1478088 lncRNA downstream 67264 43584284 ~ 43584574 (+) True G1295346
TU1478071 lncRNA downstream 69905 43586925 ~ 43588112 (+) True G1295329
trnas-gcu-161 mRNA upstream 2150 43514708 ~ 43514789 (+) True trnas-gcu-161
trnas-gcu-160 mRNA upstream 3607 43513251 ~ 43513332 (+) True trnas-gcu-160
trnas-gcu-159 mRNA upstream 4725 43512133 ~ 43512214 (+) True trnas-gcu-159
trnas-gcu-158 mRNA upstream 5844 43511014 ~ 43511095 (+) True trnas-gcu-158
trnas-gcu-157 mRNA upstream 6406 43510452 ~ 43510533 (+) False trnas-gcu-157
XM_021563274.2 mRNA downstream 12982 43530002 ~ 43534234 (+) True LOC110490104
XM_021563276.2 mRNA downstream 124361 43641381 ~ 43692014 (+) False LOC110490107
XM_021563277.2 mRNA downstream 124559 43641579 ~ 43691518 (+) False LOC110490107
XM_021563280.2 mRNA downstream 124723 43641743 ~ 43691518 (+) False LOC110490107
XM_021563278.2 mRNA downstream 125072 43642092 ~ 43691518 (+) False LOC110490107
TU1476968 other upstream 749002 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1607328 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1928795 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1928852 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3386205 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 79904 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 399158 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 512416 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 804483 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1030159 44547179 ~ 44581048 (+) True G1296266