RNA id: XM_036944401.1


Basic Information

Item Value
RNA id XM_036944401.1
length 1920
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110490107
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43641381 ~ 43692014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacattcaaatgccgttatagaagTTATAGTTTCTGAGGGTTGAAGTCTGAACGACTGACCGAGGGACCTGAGAACCCCCCTACACCATCTCACCCTGTCCCACCCGCCTCcctcagagggagagagcagccaCTACAGCCAACATGGTGCTGTCACAGAGACAACGAGACGAACTaaACCGAGCTATAGCAGACTACCTACGCTCCAATGGCTATGAGGAAGCCTACTCCACCTTCAAGAAAGAGGCTGAATTAGATATGAATGAGGAGTTAGATAAGAAGTACGCTGGTCTTTTGGAAAAGAAATGGACCTCTGTCATCAGATTACAGAAGAAGGTGATGGAGCTGGAGTCGAAGCTGAATGAGGCCAAAGAGGAGATCACTCTAGGGGGTCCGGTGGCCCAGAAGAGGGACCCTAAGGAGTGGATCCCCCGTCCCCCAGAGAGATACGCCCTGAGCGGCCACCGCTCCCCCGTCACACGGGTCATCTTCCATCCTGTCTTCTCCGTCATGGTCACCTCCTCCGAGGACGCCACCATcaaggtGTGGGACTATGAGGCAGGGGACTTTGAGCGGACACTGAAGGGCCATACAGACTCTGTCCAGGACATCTCCTTTGACCAGACGGGCAAGCTGCTGGCTTCCTGTTCTGCAGACATGACCATCAAGCTGTGGGACTTCCAGGGCTTCGAGTGCATCCGCACCATGCACGGTCATGACCATAACGTGTCGTCTGTAGCCATCATGCCCAACGGAGACCACATAGTCTCCGCCTCCAGAGACAAGACCATCAAAATGTGGGAGGTGGCCACTggGTATTGTGTAAAGACATTTACAGGCCACAGGGAGTGGGTGAGGATGGTCCGGCCCAACCAGGATGGTTCTCTTATCGCCAGCTGTTCCAACGACCAGACGGTGCGTGTGTGGGTGGCCACCTCCAAGGAGTGTAAGGCTGAGCTGCGAGAGCATGAACACGTGGTGGAGTGTATCGCCTGGGCCCCCGATACCGCTCACCCTACCATCCTGGAGGCTACCAGCTCGGAGagtAAGAAGAATGGGAAGTCTGGTCCGTTCCTTCTCTCTGGCTCTAGAGATAAGACCATCAAGATGTGGGACATCAGCACTGGCATGTGCCTTATGActctgGTGGGTCATGATAACTGGGTGCGTGGTGTGTTGGTGCACCCTGGAGGCAGGTTCATAGTGAGCTGTGCTGATGATAAGACTCTGAGGATCTGGGACTACAAGAACAAGCGCTGCATGAAGACCCTGTGTGCCCACGAACACTTTGTTACCTCTCTGGATATGCACCGGACTGCTCCATACGTGGTAACAGGCAGCGTTGATCAGACAGTCAAAGTGTGGGAGTGTCGCTGAGTCTGCCCTGCAACCTCcctatcctcatcctcctctctaccccacaACCACCTCTTTTCCCAAAAACTCACCGCAGCCTCCTCCTTTATCCCCCCCAAACAGCGCCCTATAACCCCCCCCTATCCTACCCTGTCTCTTTGACACTCACCTAAGCCCCAACTCTCGCACTCCATACCATGGTTACCCAGGCTCTCCGCCCTGCCCTGTTCAAATAAATATTGTCCTTTTATGTAAATTATTCTGGATATAGAGTACGCTTAATAAATgttacacactaacacacacattctctctcacacacacactaaaagagAAAAGTATTCCTTGCATGGTGAATTCACCCAAAACTTGTATACTGTAAATTTGCATACCGTTGTCATGACGTCCTGATGGGGGGGTAAATGGTTTGTGTTCTGTCCCAGTGGATGCTGGGTAATTGTGACACAGTGCACGCAACCCAATCACGTATGTCCTTTAAGGGTTTTATTTAGTATCTTGCCTCCGCTGTTATAGTCTGACGCTacctgggagagagggaagga

Function

GO:

id name namespace
GO:0006928 movement of cell or subcellular component biological_process
GO:0030154 cell differentiation biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007399 nervous system development biological_process
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16794 PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1478117 lncRNA upstream 13932 43632057 ~ 43632307 (+) True G1295371
TU1478111 lncRNA upstream 25047 43620915 ~ 43621192 (+) True G1295365
TU1478093 lncRNA upstream 48010 43597577 ~ 43598229 (+) True G1295349
TU1478073 lncRNA upstream 50794 43595099 ~ 43595445 (+) True G1295331
TU1478071 lncRNA upstream 58127 43586925 ~ 43588112 (+) True G1295329
TU1478105 lncRNA downstream 813 43692331 ~ 43692788 (+) True G1295359
TU1478133 lncRNA downstream 5847 43697365 ~ 43697582 (+) False LOC110490730
TU1478134 lncRNA downstream 6156 43697674 ~ 43697965 (+) True LOC110490730
TU1478138 lncRNA downstream 19517 43711035 ~ 43713182 (+) True G1295391
TU1478146 lncRNA downstream 38577 43730095 ~ 43730785 (+) False G1295396
XM_021563274.2 mRNA upstream 112005 43530002 ~ 43534234 (+) True LOC110490104
trnas-gcu-162 mRNA upstream 129219 43516939 ~ 43517020 (+) True trnas-gcu-162
trnas-gcu-161 mRNA upstream 131450 43514708 ~ 43514789 (+) True trnas-gcu-161
trnas-gcu-160 mRNA upstream 132907 43513251 ~ 43513332 (+) True trnas-gcu-160
trnas-gcu-159 mRNA upstream 134025 43512133 ~ 43512214 (+) True trnas-gcu-159
LOC110490730 mRNA downstream 4694 43696212 ~ 43697818 (+) False LOC110490730
XM_021563282.2 mRNA downstream 6937 43698455 ~ 43718346 (+) False mntb
XM_021563281.2 mRNA downstream 6939 43698457 ~ 43718345 (+) True mntb
XM_021563290.2 mRNA downstream 306495 43998013 ~ 43999931 (+) False mrps17
XM_021563291.2 mRNA downstream 306550 43998068 ~ 43999931 (+) True mrps17
TU1478092 other upstream 48775 43596924 ~ 43597464 (+) True G1295348
TU1476968 other upstream 878302 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1736628 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 2058095 41583373 ~ 41588144 (+) False G1293072
TU1478516 other downstream 224660 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 337918 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 629985 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 855661 44547179 ~ 44581048 (+) True G1296266
TU1479009 other downstream 958183 44649701 ~ 44652079 (+) True G1296185

Expression Profile