RNA id: XM_036944415.1


Basic Information

Item Value
RNA id XM_036944415.1
length 3187
RNA type mRNA
GC content 0.54
exon number 18
gene id cblb
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44173352 ~ 44326246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGATGTAACTCTCAGCCAGATGCTGGAACTCTCAGcaggatgctggatgtaactctcaGCCAGATGCTGGATTCGGGTTGTTTATTCCACGAGCCTCGAAACAGGATCATTCCGTCGACATTCTCCTGCGTGGTGCGCATGTATAGACAATGGCAACTGCTCTAAGTGGCCATAACCCAGGTGGACGCGGACCAAACCAACGCAAAGGTCGGATTTTAGGCATTATTGATGCCATTCAGGATGCAGTCGGACCACCAAAACAGGCTGCTGCTGACCGCCGAACAGTTGAAAAAACTTGGAAACTTATGGACAAAGTGGTTCGTCTCTGTCAGAACCCTAGACTACAGCTGAAAAACAGCCCCCCATACATCTTGGATATCTTACCTGACACGTACCAGCATCTGCGGCTAATTCAGTGCAAATATGAGGAGAGCCAGAGACTGACTCAGCTCAGCGAGAATGATTACTTTAAGGTCTACATTGAAAGCCTAATGAAGAAATCGAAAAGGGCGATCCGGCTTTTCAAAGAAGGCAAGGAGAGGATGTATGAGGAGCAGTCCCAGGACAGGCGTAACCTGACCAAGCTCTCACTCATCTTCAGCCACATCCTGGCAGAGATCAAGGCCATCTTTCCTGGGGGTCAGTTCCAGGGTAACACGTTCCGCATCACCAAAGCAGACGCCGGCGAATTCTGGAGGAGATTTTTTGGAGAAAAGACCATCGTGCCTTGGAAAGTGTTCCGACAGTGCCTTCACGAAGTGCATCACATCAGCTCTAGCCTAGAGGCCATGGCCCTTAAGTCCACCATCGACCTCACCTGCAACGACTACATATCTGTCTTTGAGTTCGACATCTTCACCAGGCTGTTCCAGCCATGGGGCTCCATCCTGAGAAACTGGAACTTCCTGGCTGTGACTCACCCTGGTTACATGGCTTTCTTGACCTATGACGAGGTTAAGGCACGGCTACAGAAATACACCAACAAACCCGGCAGCTACATCTTCAGACAAAGCTGCACACGACTGGGCCAGTGGGCCATTGGCTACGTCACCAACAACGGGAACATCCTGCAGACCATCCCCCACAACAAGCCCCTCTTCCTGGCCCTCATCGACGGATGCAGGGAAGGCTTCTACTTGTTTCCTGACGGACGCAGCTACAACCCTGACCTTAAAGGCTTGTGTGAACCCACCATCCATGATCACATTAAAGTCACACAGGAGCAGTACGAGCTCTACTGCGAGATGGGCTCCACCTTCCAGCTGTGCAAGATCTGCGCAGAGAACGACAAGGATGTAAAAATCGAGCCCTGCGGACACCTCATGTGCACCTCCTGCTTGACTGCCTGGCAgGAGTCGGACGGACAAGGGTGCCCTTTCTGCCGGTGTGAGATCAAAGGCACAGAGCCTATCATCGTGGACCCTTTTGACCCGCGCAACACAGGGGCTAAGTGCTTCTTCCTGGATGACTTTAGCTTGCCTATGCTCGACCTGGACGACCTGGACGAGGATAGAGAGGACTTTCTGGTCATGAACAGACTGGCCTCCATCAGGAAGCAGTGTGCCGAACAGCAGAACTCCCCCGTGATGTCGCCAAACTCCTCCCCGGTGGCCCAGAGGAGGAAAGCCCATGGTGAGGCCCTCAGCATCCAGCACCTCAGCCTGCCCCCCGTACCCCCTCGCCTGGACCTCATCCAGAAGGGCGTCATCCGATCCCCCTCTGCCAGCCCCTCCAGCTCCCCAAAGTCCTCTCCAGGGTTGGCCAGAAAACAAGACAAGCCTTTGCCTGCTCCCCCGCCCCCCAAGAGggaccctccacccccaccacctCCTGAGCGCCCACCACCCATCCCACCAGATGGATGTGTCTCCTTGGTCCCCTCGTCCACCAACGGTGTGCCCTGTGACCCCGCGCTGCCCCCTGAGGCCTGGTGTCCCAAAGAGAGCCCCCTGGTGGACCCCCACAAAACGGGGACAGGGGCTGACCGCTTCTCCAAGCTGGCCCACTCTGCCCCCTCTGATGGCAACGGTAGACCACTCAGCTGGCCCTTGGCGGATGCAGGCATTGGCAGCTCGCATCCTAGAATAGAGGCCCTCATGGAGAACCCCAAGcCTTACTCAAATGGTCTCCATGTCAGTGATGAGTACGACATTCCTCCTCTCCGACACTCCGCTCCCTTGCCCGCTCTCAACAGCAGCCACAAACACCTCAATCCTTTCACCACACCTGGTGTTGGGAGAGCAAGAGGAACAACCGAGCATGTTGAAGACGAGTATCAGATCCCTTCATCCTACCCGGTGTGCCTATCCCATTCCCCAGTCTGTGTCTCCGTCCGGATCCCTAACAGAAATCTGGAGAATGGGTCCTCGGAGTCCTCTGCAGGGGAAAACAAGCACAAGCCCTTTGAGTATGGTGGGCATTTTGAATCGGGGGTGTTTCTCTCTGGGGCAGCTCGTGCCGCCCTCTGTCCCTTCCACAACAGGACGCCCTCAGACTACGACATTCTACTTCCCCCTCAAGCACCAGAGGAGCTGTTCAACAACCTGCCTCCCTCACAGCCCTCGCCCCCTGCACTCGTCAGACACAGCTTCACAGGCCTCTCCTCGTCACCCTCCTGCTCACGAGCTCCCCGGCCTGCCTCCGGGCATGACCATTTCCTGTTAACCCCCGGTGAGCTGTTTCTTCCCTCCAAACTCGAGAATAGCAATAGAAAAGCAGTTTGTGTGCCAGAATCTGGTCTAGTGATAAAACTACCAACTCTGAACCACATATACCCTCAGTGGCAAGGGTTAGATCCATCAGATGGCCACAAATCTGCCACCTCCCTATTCCACTGTCCTTTAAAAAAGCTTGATTCTACAAAATGCATATCTCTGATACCAAACTCGGAAGTTCTCCTGACTTCAGAGTCTAGGGAGTTAGTTTTGATGTTGTCGGCACGAAGCCCCAATAATGAATGGGGCTCTGCTTGTACTGGTTGGTTCTTCCCTGTCTTTCTCACTcaaccacccacacacagacacacacagcccccccGTTCATTACAACTGTTTGATTTTCAAATCTAAACAACCAGCGTTCTCAACTCCCCaggaaaaaaataacatttgagagaaccaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1478864 lncRNA upstream 4517 44168088 ~ 44168835 (+) True G1296051
TU1478835 lncRNA upstream 20332 44152695 ~ 44153020 (+) True G1296030
TU1478662 lncRNA upstream 49917 44070986 ~ 44123435 (+) True G1295872
TU1478677 lncRNA upstream 77909 44094802 ~ 44095443 (+) True G1295887
TU1478637 lncRNA upstream 135679 44037390 ~ 44037673 (+) True G1295849
TU1478861 lncRNA downstream 70586 44390482 ~ 44391077 (+) True G1296050
TU1479004 lncRNA downstream 77975 44397871 ~ 44613813 (+) True G1296182
TU1479052 lncRNA downstream 115371 44435267 ~ 44436862 (+) True G1296227
TU1479053 lncRNA downstream 124173 44444069 ~ 44456091 (+) True G1296228
TU1479117 lncRNA downstream 247549 44567445 ~ 44573979 (+) False G1296282
NM_001160597.2 mRNA upstream 148769 44005413 ~ 44024583 (+) True nipsnap2
XM_021563290.2 mRNA upstream 173421 43998013 ~ 43999931 (+) False mrps17
XM_021563291.2 mRNA upstream 173421 43998068 ~ 43999931 (+) True mrps17
XM_021563282.2 mRNA upstream 455006 43698455 ~ 43718346 (+) False mntb
XM_021563281.2 mRNA upstream 455007 43698457 ~ 43718345 (+) True mntb
XM_021563303.2 mRNA downstream 266389 44586285 ~ 44600938 (+) False LOC110490121
XM_036944421.1 mRNA downstream 266389 44586285 ~ 44603799 (+) False LOC110490121
XM_036944422.1 mRNA downstream 266407 44586303 ~ 44603799 (+) False LOC110490121
XM_036944423.1 mRNA downstream 266407 44586303 ~ 44603799 (+) False LOC110490121
XM_036944424.1 mRNA downstream 269734 44589630 ~ 44603799 (+) True LOC110490121
TU1478633 other upstream 143491 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 256873 43916178 ~ 43916479 (+) True G1295730
TU1478092 other upstream 575888 43596924 ~ 43597464 (+) True G1295348
TU1476968 other upstream 1405415 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 2263741 41909034 ~ 41909611 (+) True G1293295
TU1478844 other downstream 1607 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 227283 44547179 ~ 44581048 (+) True G1296266
TU1479009 other downstream 329805 44649701 ~ 44652079 (+) True G1296185
TU1481520 other downstream 1934443 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1994356 46314252 ~ 46316002 (+) True brd1a

Expression Profile