RNA id: XM_036944422.1


Basic Information

Item Value
RNA id XM_036944422.1
length 3656
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110490121
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44586285 ~ 44603799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGACTTCCTTCATAACGCAACCCCGCCCGCCCGACTGACTGACAACACAAGACAACGAAGATCCATCCGCTCCTCGGGCGTCTGACCAATTctgccacagagaaggagaggaggaaggactaTGTTAGCTTAGTGCTGCTGGTGACTGTTAGAGTGTGTAACATGCTGACTAGATCAGGTTGCTGAGGGTGAGAGGTGAGAGTTGAAGGGTCGGCAGCGCAGCAGGCATGCAGAGCATTAAGTGTGTAGTGGTGGGCGACGGTGCCGTAGGGAAGACCTGTCTGCTCATCTCCTACACAACTGGAGCCTTCCCTAAGGAATATATACCCACCGTGTTTGACAATTATAGCAGCCAGgtgACAGTAGACGGGCGCTCCATCAGTCTGAACCTGTGGGACACGGCAGGTCAGGAGGAGTATGACCGTCTGAGGACCCTGTCCTACCCTCAGACCAACATCTTCATCATCTGCTTCTCCATCTCCAGCCCCGCTTCCTATGAGAACGTCAAACACAAGTGGCACccagagGTGTCCCACCACTGCCCCGGTGTGCCTGTCCTCCTGGTAGGCACTAAGAGCGACCTGCGTAACGATGAGGAGACCCAGCGCAAGCTGAAGGAGCAGAGCCAATCTCCTGTCACTCATCACCAGGGGGCGGGACTGGCCCGTCAGATCCAAGCCGCCCGCTACCTGGAGTGTTCCGCCCTCAACCAGGATGGGATCAAAGACGTGTTCGCTGAGGCCGTCCGAGCCTTCCTCAACCCCCAGCACACCACCAGCAAGAGGTCCTGTAggctactgtagagagagagagaaagagtaaaggAGGGGTAAAAAAGACTGATGTTTGCTGAGGCCATCCAAGCCTTCCTCGACCCCCAGCACACCACCAGCAAGAGGTCAAGAAGGGGAAAGAAGGGTGGTTAGCTAGATGAAGAGACAGAAGGGGGTGGGCAGTTGAAACTGAAAAACTTACTGCAACAATGGAAATAATAAGAATGTACATGACTATGGTAGAATAATTCAGTTACATGTAAATATGACAGGAGAACAGTATTCTCTTTTCCCCCAGTGACCGACGAGCCTTACTATTGGGAAGAGGGAGGGGCAACTGCACTCTGCAAATGACGAATTACAGTGATCTGTTATCATGGACACTTGGGCAGTTCTGATAGGCCAGAGCAGTGTCACTCAACGGCTTTACCAGAGACTGATTGGTCTGTGATGGTGGCGTCTACTTTCTCTTCCCACTCCTTGACCCTAGTCTCTTTTCCTCTTATTCCAGTTTTAGAGCTCAGTAGAAACCCAACTAAAGCATATGTAAAGCATATTGAGAAAAATCATGATGAGCCATGCCTCTTTCAATTCCCAGAAAAGAGCCTTtaatatttgtttgtttgtaaatcaAAAATGTGCCTTGTGTGTTGACGCTGGCTGCCTCTGTTCAGGCCAGAGGTTAGAGGTCGCAGATGAAGCTGGGGAGCTGAGAGGTTGTGTCCCAAAAGTTGTGAAACCTTTTTTCCACGACCGCTGATCTTCCTTCATATCTTCCCTTATATCATAATCATTCGCAAGGAGATtcctgcaaaaatattatttgaagtTGTATACTACgaagcaagctagatctactcaggctTTTATAAcgctagccagcttcagttagcgTCACATTCCAGATCAGGCTTTTATGAAGTTAGCCTACTTcaattagcttcacattccagatCAGGCTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGCTTTTATGAAGCTAGCCTACTTcaattagcttcacattccaTATCAGGCTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGCTTTTATGAAGTTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGCTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGCTTTTATGAAGCTAGCCTACTTCAGTTAGCGTCACATTCCAGATCAGGCTTTTATGAAGCTAGCCTACTTCAGTTAGCGTCACATTCCAGATCAGGCTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccagatCAGGGTTTTATGAAGCTAGCCTACTTcaattagcttcacattccacATCAGGCTCGTACTACTACGGTGGATATTGCTCTTCCGCCTGCCGCTAACTCTAGCAGGCTGGTTACTGCGCGTGCATGTAGCACATGGCTAGTCGAATGCCAAACTCgtcattgagacaatgctgaaacgTCAATCTATGGGCGAGTCAGTGCCACACTATGATTTGTGCCGAAATTTAGAAGTGCCATCTTTATTTGATTACTTATCGTTAATTCTAAGTTTGTTGTGCTTTTGTGTGCTCATCAATGCACGAGCACCTTCTGTAGAACAGCTTGTTGCGTTGTGGCCACAGACATATAATCCATAGCAGGGTTTTGGAACCTCTAaacctggcaatttgactgtaacctaacatagcaggcataaaagaaacacctgaaactagatcccctacatactggtcttgacGAGAAGAAAAAGGTCAttttctgcactgttcaaccaatccagttaATATGGAGGAGGTGTTAAGATGGGGTGTCATGCTGTTAATGTCTGAAAGCAGAAGTCGCGCCACAGGCTCtttttccatttcccctgaaaaccagCACATCCAGTTGTTGGGGACTCAACAGAGGCTACATACACTAGCAATGGCTGCCAGTCTTCACTTGaatgggaactgccatctatggattaTGGTTGGTTGCCTTTCGCAAATTTCAAAATACAATTGCACAAAAAAACATACCGTTTGGAAAGCAAGTactgtcattactaaatgtgtcaTGTGATAggtgttaaaaatatatatatttacacacaaaaaacattttattaatATATTTAACCAATCGTCTTCCTCAAATGAAGGGGGTAATGACCCAATCTTTGCGAGAGGGAGGGTatctgatttcattggtcctcatGGCTCAGACACTTCATTCAGGATAAATGGAGTTAGTCCTGAGTTAGCCTTCAGGTTAGACACAGCTTGAGTCCAGTCTCTTTGCTACAGGAAGTAATCCTTCTACTGAGGTTCACAATGAGACAGAGAGCCATTTCCACTTCCCCCCTCACTTCCTGTCTGCCTGTATACCTTCCAGACCATTCCAACAGTAGAATCTTTAGACCACCCTTGCCCCCCCCCTTTTCATCtgctcttctcccctccctcacctctcctttcccctaTTCTCATACCCTCTGcctccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479124 lncRNA upstream 11408 44569481 ~ 44574895 (+) True G1296283
TU1479117 lncRNA upstream 12324 44567445 ~ 44573979 (+) False G1296282
TU1479119 lncRNA upstream 12324 44569992 ~ 44573979 (+) False G1296282
TU1479120 lncRNA upstream 12324 44572221 ~ 44573979 (+) True G1296282
TU1479121 lncRNA upstream 15854 44568662 ~ 44570449 (+) False G1296282
TU1479147 lncRNA downstream 19822 44623621 ~ 44624085 (+) True G1296303
TU1479148 lncRNA downstream 20770 44624569 ~ 44624869 (+) True G1296304
TU1479151 lncRNA downstream 26054 44629853 ~ 44630112 (+) True G1296307
TU1479010 lncRNA downstream 48448 44652247 ~ 44654702 (+) True G1296186
TU1479013 lncRNA downstream 51116 44654915 ~ 44656628 (+) True G1296189
XM_021563294.2 mRNA upstream 260057 44173501 ~ 44326246 (+) False cblb
XM_021563293.2 mRNA upstream 260057 44173503 ~ 44326246 (+) False cblb
XM_036944415.1 mRNA upstream 266407 44173352 ~ 44319896 (+) False cblb
XM_021564189.2 mRNA downstream 42994 44646793 ~ 44648830 (+) True LOC110490732
XM_021563311.2 mRNA downstream 115501 44719300 ~ 44721744 (+) True cldn2
XM_036944432.1 mRNA downstream 131961 44735760 ~ 44848514 (+) False LOC110490127
XM_036944427.1 mRNA downstream 133734 44737533 ~ 44848514 (+) False LOC110490127
XM_036944428.1 mRNA downstream 133734 44737533 ~ 44848514 (+) False LOC110490127
TU1479092 other upstream 5255 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 260124 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 556442 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 669824 43916178 ~ 43916479 (+) True G1295730
TU1478092 other upstream 988839 43596924 ~ 43597464 (+) True G1295348
TU1479009 other downstream 45902 44649701 ~ 44652079 (+) True G1296185
TU1481520 other downstream 1650540 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1710453 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2966031 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3342569 47946368 ~ 47947892 (+) True G1300598

Expression Profile