RNA id: XM_021564189.2


Basic Information

Item Value
RNA id XM_021564189.2
length 1490
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110490732
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44646793 ~ 44648830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCCAATACAACACCCCCATTCCAGCTCCTGTCCAACAACGTTTCGTTGACCAATCAGAGGTTGGCAGTGCCCATAAGGACGTTCATGagctttctgtctgtgtctccatgtctcctcttcctctacatcAACACTATCATGCTGTACAGTCTGAAGAGCAAGCCCATGTTCAGAGAGACCTCACGCTACATCTTGTTTGGTAACCTCCTCTTCGCCGACACCATCCTACTGCTGACCAGCCAACTGCTGTACATATTAGCCGTCGCTGGGTTGTTTGTGATCCGATATATATGTGTTGTGATTGTGTTGGTGGCCATTTTCACCAGCGCTGTTTCCCCTCTCAACCTGTCTGTGATGTCGCTAGAGAGGTACGTGGCGATCTGTTTTCCTCTGAGGCATGCCTCCATTGTCACCCCCAGGACTACGGGCGTGGTCATTGCTGTGGTGTGGATCCTGTGTTCCCTAAACACTATCATTAAGCTTGTCATGCTGCTGGTTCTAGAGTCCATGCCCCTGGACCAGTTCATGCAGGAATTCTGCTCTACCAGCGAGCTTTTCCACCTGAAGATTCACAACCAGGTAGACAACGTGTTCATCAGCATCGTCTTCATGACCGTTGGTTTTATCATCATGTACTCCTACATCGCTATGATGATGGTAGCCAAGTCGGCCTCCGCAGACAAGGACATAAACAGCAAGGCTCGTAACACGGTTCTCTTGCACCTGATCCAGCTAGGCCTgagtctctcctccaccctggtTCCGACTATAGTGTCAGCCTTGAAATCCAGAGCAATGGACAAAGCCACACAGATTGAGTATATTGTGTTTATCATCCTGATTATCCTGCCCAGGTGTCTGAGTCCTCTGATCTACGGCCTGAGAGACAAGGCATTCAGACACATCCTCATGTACCATCTCACCTGTGGCCTCAGACGCACAGTGGAGCCCATTAAAATCTCCAGCTATTGATGTTTTTTCTTGTAACAGAAACATTTATTCCGTTTTTAATGAAAACAGTTTTTAAGAACTTGTAATAATGCTGGAAGAATGAACTAAACTAAAACACAGGTATGTGAATGTTTTAAAGGGACAATCTGCAGTTGGTACATACTTTTTTACCTTACAAATAAATGAAGGATAtgcacccattgattcttgaagaatattacTTATACTTCGGCTTCTGATGGGGTTCGAGGCATTTAGACGTTTGTTTGACTCCAATGTTCgtaaaacaaagtaaatgtaaacaaacactccaTAGCCTCAAAACACGGTTAACACTATAATTTTGATGTCATGGaatgtcagtccttgcatccatagcatCTTCTTTGAATTTGAGAgttagttacatttctccagcctcatccgtcagctttttaccgaaacagtgccgctttgttattgtttctttCAACtgcggattgcccctttaacttGAAACCACAGTATGTATGTTTTCCTGTAATACAATTCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479151 lncRNA upstream 16681 44629853 ~ 44630112 (+) True G1296307
TU1479148 lncRNA upstream 21924 44624569 ~ 44624869 (+) True G1296304
TU1479147 lncRNA upstream 22708 44623621 ~ 44624085 (+) True G1296303
TU1479004 lncRNA upstream 32980 44397871 ~ 44613813 (+) True G1296182
TU1479124 lncRNA upstream 71898 44569481 ~ 44574895 (+) True G1296283
TU1479010 lncRNA downstream 3417 44652247 ~ 44654702 (+) True G1296186
TU1479013 lncRNA downstream 6085 44654915 ~ 44656628 (+) True G1296189
TU1479167 lncRNA downstream 11647 44660477 ~ 44660710 (+) True G1296322
TU1479169 lncRNA downstream 14002 44662832 ~ 44663251 (+) True G1296324
TU1479176 lncRNA downstream 21855 44670685 ~ 44671027 (+) True G1296331
XM_036944421.1 mRNA upstream 42994 44586285 ~ 44603799 (+) False LOC110490121
XM_036944422.1 mRNA upstream 42994 44586303 ~ 44603799 (+) False LOC110490121
XM_036944423.1 mRNA upstream 42994 44586303 ~ 44603799 (+) False LOC110490121
XM_036944424.1 mRNA upstream 42994 44589630 ~ 44603799 (+) True LOC110490121
XM_021563303.2 mRNA upstream 45855 44586285 ~ 44600938 (+) False LOC110490121
XM_021563311.2 mRNA downstream 70470 44719300 ~ 44721744 (+) True cldn2
XM_036944432.1 mRNA downstream 86930 44735760 ~ 44848514 (+) False LOC110490127
XM_036944427.1 mRNA downstream 88703 44737533 ~ 44848514 (+) False LOC110490127
XM_036944428.1 mRNA downstream 88703 44737533 ~ 44848514 (+) False LOC110490127
XM_036944429.1 mRNA downstream 88705 44737535 ~ 44848514 (+) False LOC110490127
TU1479092 other upstream 65745 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 320614 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 616932 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 730314 43916178 ~ 43916479 (+) True G1295730
TU1478092 other upstream 1049329 43596924 ~ 43597464 (+) True G1295348
TU1479009 other downstream 871 44649701 ~ 44652079 (+) True G1296185
TU1481520 other downstream 1605509 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1665422 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2921000 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3297538 47946368 ~ 47947892 (+) True G1300598

Expression Profile