RNA id: XM_036944427.1


Basic Information

Item Value
RNA id XM_036944427.1
length 5811
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110490127
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44735760 ~ 44848514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCAGGGAGAGGCGGAGGAGAAACGAAGAGAGAGAGCGCCCAACCCTGTACACGGCAAcaacacaccgagagagagagagagagagagagagggagagactttaCTGGTGAAGAAAGAGGAATAGTCGACGCCGTGGATATGATCTAAAAGAGTATCCGAAGAGGCAAACAATACAACTTTCTCCCAAATAGCAAATTGATTCAAAAAGGTGGAAAACTGCCAAAAAGATTACTATTATTCAAATTCACCCCACccgatcaaccccccccccctctgcacCCTAGCTACCGAGATGCACACGGAGACTCGAAGCAAGAAAtGCCAGTCGAGTCCTAAGAAGGCCAGCAGTGGTGCCACCTCCCAGTCCCAACCACATCCAAAGGTGCCCCAACCCAAGAAGGAGCCCCAACCCAAGAAGGAGCCCCAACCCAAGAAGGAGCCCCAACCCAAGGTTCCCAAGAAGGAACCCAAGACCGAGCCCCAGACCCAGGTGGAAGAAGAAGACATGCCCTCAGTACACATCAAACCAGAACCAGAAGAGGTGGAGTGCACGcaggctGAAGTGGGTGAGGAGTTTCCCCAGCCTACAGACCTGAAGATCAAGACAGAGAAGACCCAACCTgagtctccccctcccctctgcaCAGCCACAGACATGACCATAGACACAACCACAACAGACACACAAGACGACTCCTCCCGCCCCTCAGAGGACCAGACAGAACCTGTCGACCTGTCACTTGGCAAGCCACGCCCCTCCCTGCCCGTTTCTACACCGTCCACCACAGCCAACCCCGCCCCCAGCTCCGTGGCGCCGCCCACACTGTCGGCAAACCACATCCCTACGGTAACCATTCTAGACACCATGatGCTCTCTCCCGGGTCCATCCTAGCATCCACCCAGGGGGCAGGCGGTCAGCAGATCCTGCATGTCATCCACACCATCCCGTCGGTCAACATGCCCAGTAAGATGGGCCAGCTGCAGACCATCCCCGTGGTGGTCCAGTCTCTGCCCTTGGTCTACACCACCATGCCCACGGACGGGGTGGCCACCGCTGCCATCACAGTGCCCCTCATCGGGAGCGACGGGCGCTCTGAGGGATCCGTGCGTATCAAGCCTGGCTCGGCGTCCCCAGTGGAGTACCAGAGTGACAGTGATGTGGAGAGTGGGACAGAGTCGGGCTCAGCTTCCTTCAGTACACCGGGACTGGACACAGGGTCGGGCGTAGACATGGACATGCAGGTGGATCCTGATTCGCCGGATATGAAGAGGAGGCGTGTCCATATGTGTGACTATGATGGCTGTAACAAGGTGTACACCAAGAGCTCACACCTTAAAGCCCACCGCAGGATACACACAGGAGAGAAGCCATACCACTGTACATGGGAGGGCTGTACCTGGAGGTTCGCCCGGTCAGACGAGCTGACACGACACTTCCGTAAACACACGGGCATCAAGCCCTTCCGCTGCACCGACTGTGACCGCTCCTTCTCCCGGTCCGACCACCTAGCCCTGCACCGGAGACGCCACGTcatgatgtgaaccatgacctcTGGCCCCTGATCTTTAAACCCTTCCCCCTActaccatcccccccccccccccccccccccacccccccgggTACTCAACTGAAACTCAGAAGGGAGGGGCTAAACCCTGAATGGTCACTTCCTGttcctgtctcttttctctcctcgtCCTCTAATTTGAACTGTGGGTCATCATGGAGATCAGGAAATGAAAGAGGTGGAGAACACAGATTGCAAAGTAAATGATGAGAGCAGTTCATTGTTGTTATTTGGTTGCCCAGCACCTGAAGGGGGAGTCCACCACTCTTCACAGCCACTCTCACCCCAATGCTTaccttctcatctctccctcacaCCCCACTCAGTGTGACCATGGCATGACACCATCCTCCTCTATGGCTTCCTATCCTATcctggactgagagagagacagagaacggaCTTTGAAATGATGCAGGGATGCCTAAACCATACACTCAGCTCTGAGGAagaagatgagggaggaagagaacgGAGAGGAGGTGAAGGGGGCGGGGAAGGATATGTGGCTTTTGTCTTGTTTGTTGATTTCAGAGGGGAAGATACTGTAGATACCTTTACTGTATTTTCCTTCTCAACTTCTGTGAtcctgcattgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgttagtGAAGCGTGTGCTATTTAAAGACAGTTGAAGATGCATAAAGTCCTTTCCTCCATATTCTTCCCGAGCAGAGTTCGCAGACCCCTCGGAGTGTGTGGGGTAGAACTGTTCTATTCTATCTAATTCAaccccccctccactcccccttccCCTAAAACAGGGAGCTACAAGACTGTGAATTTTTATTAAGATTCTGTTTTCCTCCATTTCAATCAGAAATGAAATCATGTTCACTTGCCCCACATTTTTAACTTGTTTGTTCAGTAACAGTATTTGTTGTTTTAAAAAAGGCCTTTTTtccttcttctccttccctccttctctttgcCAGTGAATGGCTCTTAACAGAATAACATCCCTTTTTTTTGTATATTTCAAATCCTTAGATTGTGTTTGAGGCTGTGAAAGTATAAGAAAAAAAAGTTTGAGATTACAAATGGAACTCTCGCAGGGATCTAggggagcttgtgtgtgtgttttttgcgtgtctatggacgtgtgtgtgtgtgtgtgtgtgtggaacaaaTAATCAGAACTGATGATTTTAGAAGTGTGTGTTTGGGGCAGCAGAGTGTTACCTCTTGCTCGTCGGCGCCTTAATGAATCAAAGTCAATCTGAGAAACTCTGGTTTTAGAAACGCGCATTTATTTTGGTCTTCAGGGTTACCCAGGAAACGGGGTCTTATCGCCCTGACGACAGGTCACGAGGCACTCTCTTTTTTGTTACAAGCATTTCTACCCAGACTCAGATCAGGGCTTGTATTTACAGAGTCACAGAGTAAGATttttgatctaggatcagatctgcCCTTTCCATAcgatcttattcattatgatctaaaaaggCAAAACCGATCCTAGATCAGGAATttactgatcttcatgtcttaagcTGGCTGTTTTTAGCTCCTGCTCTCTGGGTTCACTTGATTATGCAACTTCCACAGACCTCACTCCTTACGCTGTACTGGGGTCAGTGGATAAGTATGTGTTGCTAGTGGAACATACAAAGAGCTCACTCCAAAGTGCTGTTATGGAGTAAGTAGCAACATACATCTTGCTACTGGGACATACACAGATCTTGCTCCTAAGGGCTGTACTGAAGCCAGTGGCTAAGTACGTGTTGCCACTGGAACGCACAGCTCCTGTGGTactagtgctgagtgattaactGAAATGTCGGTTATTTTAAGTTTTtcaaacaactaattgaccaacaTCAGTTCAATTATTTAAATTCCATTGTTCCGTTTTTTTTTCAGTGAGCTCATTGCACAGTTTCTGTACAAATAAATCAGATATAGACTGAAATGTTTGATGTGggagggagttgtagtttcaACAGGGCCAATATTCCAAATAGTTTAGCTCATAAAACGCGGTgaataactacaatgaccataatccattgcgcatcTACTTGTCTGGTCTATGTTTTCTTTTACGCCAGCTAAAAAGAAGAAGAATGCGTGATCGTGAGAGGATGCAGAGAGCAGCTGTTGGTTCGCAAGGTATCTGTACCTgcaaatacatgatctaagtgattgatagttggtattcagcagtcataaaataTGCGTTATTTACTTTGAAgcactactaaaatagtgattttgtcagacagcaggcagcagctcaatagagatgagatgagttggaatgaaatacaaatacaaaactaCACCTCCCTCCTACATCAAACAGTTCTGGctgtaaagtcatcaaataaaacaaatgtaatatacacaacagcTGAAATATTTGATTAAAGTAAAGTGATGTGAATAAATGTTGGTTAATATAAGTGATGcacagtaatgggcagtcactacctcCATGGGACTTTTGTTATTTGTTTTGTCCTGTGTTATTACAGCATTCAACCCgcataatgcatagtgcatttaatgttttttttttttttaaatcatcaaaACCGCGATTATATTTGAATAGTTGAACCCGAaaccgaaccgacctcaaaaagtactaatcgctcagcactatgtGGGACATGCATACAGAGAGGGCATACTTGAGGACATGTAAAACAAATTGTTTGGCTGTCTCGTTAGCAGTCGCAGCAGCCATAATCATTTCAAACGCTAGCTAAATAAAACACGAGCGAATTGTAACATCCCTTTTCTGTTGACAATTTAAAAAACTAAATGCAGATAATGCTTGTCTGACTCTGAGCCCAGCCTTGGTGTGAGTTGAGTTGAGCGCATGCCGGAAGCAGCGAGAGATCTTATTGGTCCACACAGAGCAATGCAATGTTCCTatgagtttctctcattctctgcTTCGACTCCTAACAATGATACTAAGCACATCTTTCTAGAAGAGTATATGCATTTGATTGCaacttgttttgttttgtaaacTGTTCATATTAGATGTTAAGGACTATGAGAATAATGAAAAAGAATAAGAAGTGTACATTCTGTATATAAATCAAAAAGCAAAATAAATGTAACAGGTGGAGTTCTATTTTTAACACTGACTAGACAATGTGAAAATATCATTTGTATTTTCTTTTCTCCTCTGTTGGATGGATTTACAAATGAAATGTGTATAAAAAGTTAAATTCCTTCTTTACAAAAAAAATCCCCCAAAATCGGTCCCTTTTGTGTTGTGCTCACTGTTGTTGCATGGAGAGTAGCATTTGTTTTTGTGAAGTCGGTGAGCATGTCGGTGTGAACATGGTGCCCTAACCTAACAGTTATGATGACCTGCAACAAGCACTGAAAAATCTGAAGAACCGTCTCGACCATATCCTTATCCCAaaagtcaccctattccctacgtagtgcattaccttagggttctggtcaaaagtagtgcactatatagagagaAGGATGCAATTGTGGACACACCCCAATGCTGAAAAACTGATAATGTGTCATATCTGTTGTCGTCGGTCAAACCCACCTCAATGCATAGACATGGCAATGCCAGTGATATACAATACAAGACACCAACTCATCCATATGAAATAACATCAGAATAATTTTTTATGTACTCCATATACCACAAAGAAAACCATCCAGTAATACATCAATACACCACGATAGTGATGCCCTTGACCAAGAACATGCATCTATGGTTCAGACTTGGCAGCATACAACTGAAGACTTCATGACCATCTGCTCCTTACTGTATCTGAACAAGCACGTTTATCCACTATTCGCTAGTCACCCATCACTTCTACAATACGGCACCACATAATGTAAGGGTAGAttgattgattgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtattactgagcgtgtgtgagtgtgctttTTCTTATCATTAATCAAAACTCTTTAAGAAATCATAATTTTAGGTATTTTTTATTGAATGCAGTAATTTATGGGCCAGTACTATATTACTCAGTGCAATGCAGTTATCGTTATAATAATACAAGTCATTAATATTATTTCTTTTGTATTTGTACAGAACAAATGTGTAAAGATCAGTGAGGAAAACGTGAGCTTTTTGATACTGTGAGATGTTGTTTCATTAAGTCAGTTTCCCCCTGTACAGTTGTGATTTACCCCACTCCTTTTATAGAATAAAATGTTTTTGGTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479180 lncRNA upstream 61490 44675750 ~ 44676043 (+) True G1296334
TU1479176 lncRNA upstream 66506 44670685 ~ 44671027 (+) True G1296331
TU1479169 lncRNA upstream 74282 44662832 ~ 44663251 (+) True G1296324
TU1479167 lncRNA upstream 76823 44660477 ~ 44660710 (+) True G1296322
TU1479013 lncRNA upstream 80905 44654915 ~ 44656628 (+) True G1296189
TU1479264 lncRNA downstream 12541 44861055 ~ 44861335 (+) True G1296410
TU1479267 lncRNA downstream 15038 44863552 ~ 44866078 (+) True G1296412
TU1479302 lncRNA downstream 76358 44924872 ~ 44925086 (+) True G1296446
TU1479308 lncRNA downstream 82537 44931051 ~ 44931610 (+) True G1296452
TU1479286 lncRNA downstream 88691 44937205 ~ 45000672 (+) False G1296430
XM_021563311.2 mRNA upstream 15789 44719300 ~ 44721744 (+) True cldn2
XM_021564189.2 mRNA upstream 88703 44646793 ~ 44648830 (+) True LOC110490732
XM_036944422.1 mRNA upstream 133734 44586303 ~ 44603799 (+) False LOC110490121
XM_036944433.1 mRNA downstream 89471 44937985 ~ 44993895 (+) False LOC110490129
XM_036944434.1 mRNA downstream 89790 44938304 ~ 44993895 (+) False LOC110490129
XM_036944435.1 mRNA downstream 96047 44944561 ~ 44993895 (+) True LOC110490129
XM_021563325.2 mRNA downstream 241631 45090145 ~ 45151979 (+) False LOC110490132
XM_036944437.1 mRNA downstream 241631 45090145 ~ 45151980 (+) False LOC110490132
TU1479009 other upstream 85454 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 156485 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 411354 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 707672 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 821054 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1405825 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1465738 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2721316 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3097854 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3511314 48359828 ~ 48360439 (+) True kiss2

Expression Profile