RNA id: XM_036944435.1


Basic Information

Item Value
RNA id XM_036944435.1
length 3858
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110490129
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44937985 ~ 44993895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCAGTTGCTCAGTATTCAACAGACACCAGTGCTGTCTTCCACTTTGAGGACTTTgtgtctgaccctaaccctgacaacCTGATGCGATCCGTGGACCATTTCCAGGAGGCGACATACACCCCATCAGCCATCCGCTATGTTCTGTGAGTGACATACACCCCATCAGCCATCCGCTATGTTCTAGAAGAGATGATGACAGAAGAACGGGGGATGAGGAAACATTCCAGGAAGCTGTTGGTTGTGATAACAGATGGCAAATCTAACGACCCTAAAGAGACCTTTAACTCTGTCATACCATTGGCCGAGATGAAGGACGTCATCAGATTTGCCATTGGGGTTGGGAAGCAATTCTCTAGACAAGAGCTTGAGCAGATTGCGTCTTTCCCAAACTTTGTATTTGAGACCAACAGTTTTGATGCTCTGAATTCCATTCAGAATGAGCTTAGGGAGAAGATCTTTGCAATTGAAGGAACTAACTCCACCAACTCCAGTTCATTTGAACAGGAACTGTCCCAGGGAGGCTTTAGTACCACTCTCTCTGGGGGTGTGTCTCTGTTTGGGGCAGTAGGGTCATACTCATGGTCTGGGGGCATTGTGGAGGCAGCCAGAGGGGTGAATGCCACGTTCATCAATGCCTCTGCACTGGAGACAGACATGCAGAACTCCTATCTGGGCTATTCAGTGGCAGTGGCAGAGACAGTGAATGGCAGTATATATTTTGCTGGAGCTCCCAGGTTCAACCACACTGGGATGGTCCTGGTCTTCCAGAGGGATCCTCTCCAACAGGAGTGGACTGTCACCCACAGGATACCTGGGTCTCAGcttgGTTCCTACTTCggggcagagctgtgtgtgttagAGATCCATGCTGGGCCAGGGGAGGGCCGTGCTGAGCTGCTGGTTATTGGGGCTCCATGGTATCACGCCCAGGGTGTTGGGGGAGAGGTCCACGTCTGTACCCTGGAGACTGGAGCACCCAACTGCTCCCTCACCCTGCATGGAGTCCAGGGGAACGTCCATGGTCAGTTTGGGacgtctctgtccccctgtccagACCTGAATGGGGACGGGTTGCCGGAGCTGGCTGTAGGAGCCCCactggaggacagaggacatgggAGTGTTTACATCTTCCTGGGACGCCCTTGGGGCATCCAGGCCAAATACAGTCAGAGGATCCAGGGAGTGAGCGGCAGAGCGGGTAGAGGGCTGCAGTTCTTTGGGGTTTCGGTGCACTCTGCTGGGGATCTGAACTCAGACGGACTGGCTGATATGGTGGTGGGAGCTAAAGGAGCCGCTTTCATACTGAGGTCCCAGCCAGTGATGCGTGTGTTGGTGTCTGTCACCATGGACCCTCCCATGATCTCCCAGAACTACTTCCACTGTGCTGTCCCCATGGCCCTGAACACTCCCGTAACCACAGCCATTCTGTGTGTCACTGTCACTGGGTCCCACGTGGGAAACATACAGGCTTCTCTCCAGGCATCAGTGTCTGTGACAGTGGATCTACTGGAGGATCAGACCAGGACCAGGCCAGCCCGTCTGCTCTTCTACCCCAGATCAACATCCTCCAGCTGGGTTGAAACAGTTACAGGCACTGCCTGCCACAACTTCTCCCTCAGTATCCCGGAGTGTATATCAGACTACCGTGAGGTGCCTCTGTCTGTTCAAATGGCTGTGGAGGGCCTGGAGGTACCAGGGACAGGAGGACTGAAGTCAGTCCTGAGCCCAGACAACCCAACCTCTTTTGCACACATGATCTTGCTGGAGAAGGTTTGTGGCGAGgaccatgtgtgtgtctctgacttATCAGTCAACGTCACCAGtccagaGGTGGTGTGTAGCGAAGGTTTCCCAGtagaagtagaggtagaggtggctAACAGTGGAGAGGATTCCTCTGAGGCTGAGCTGACACTGGTCCACCCCTCCTCCATACCCTTCGTTCCTACCAAACGGCCATCAGGACCAGGCCAGGTGGCTGTTTGGTGTGTGTCCAACACCACAGGACTagaaaacatcacacacacagtgtgtcctCTCAGCTCTTCCGTCCTGAGACAGGGGGCACGGGTGACAGTGTTGATGTCATTCACAGTGTTTGAGCCAACCTGTTTGAGAGAAAGACTGGCTTTAAATGTGTTTGTTACTACTGATAATGAAGGACAGGGCACCCTTCAGGATAACTATGCAAGTGCCTCTGTCGATGTCAAACTTCCTATCAATATTGTTGTGAAAGGGGGAGACTCCTCCCAATACATAACTTTCCCAGACCACAAGCTTCTGGAGCACATATACATGGTGGAGAATTTTGGAGATGTGGCAGCACCGGTCAATGTAACATTTGTGATTCCAGTGGAGTTGGACTCTGGTTACCTGTGGAATGTGTCTCTTCCTCAAACAGATAACAGCAGAGGAAAGTGTGAGAGGAAGGAGGTATTCTCTAAACAGGAAAAAAACACTCTGTTTTATCAGCACTGTAGTGGGGTCATCTGTCATGTGGTTGGCTGCACCATAGGACTGTCATCCAACAATCAGCCAACCATCTTCAAGTTTGTTGGGAATGTCAGTAGAAACTCAGAGGGTTCAGCAGTGCAGGTGGAGGTGGTCAGTTGGGGATCGCTGTCCTTCGACCAGAGTGTCTACTCCCAGTACCCTGCCGTTGGTTCTCAGAGTGTGAAGATTCTGTCCATTCTGGAGACAACTCCTGAATCCCACACTGCTCTCATTGCTTCTATCAGTGTTGTGTTTTCACTGTTGCTACTGATGATAATCTCTGGGTTTCTCTACAAGAGGGGTTTTTTCAAGAGCAGAAGAATTGCCTCTGGTGTTGTTGATTATAGTCCAGCTGTTCCTGGTCGGACTGCAGCCCCTGATGATGACCATGGTCTGACCGCTGATATTACCTCACTGGGGGAGAACACCCTGTAgcccagtggcggtcagtgccgtttaagttAAGGGAGGAAGATTTTTTTCATgcgcatggccttatttctattacagcatattggatgactgtcattcatattccattcacccagttcaatgtaacattggataggtttaggctactacatgatactagaaTTTTCCCTGTACACATCATGAGGgttctacaacctagcctatgaatgaaagtttacaacgtaggtgcacacaggtcaagAGACACATTTGAAGTGACAGActgtgacacatggacagacagtgacacctTACACACTCTTGCCTTCATCTAGCTGATACAAGGTGTAGTCATTAATCCAACATTTGCAAACAAAAGTTTCTAATGGACAAATTCAAGTAtttttatccccgttttgttccgtttaagaaacgtgtttcaacagaattggcggaatgaatacacccctttTTATCacgcgtaaacacagttcactttcatagcagccacgttgtattccttctcgcatccatgcactctcctcctctcacctcttcccttcacttgtggGCTGCAATGCACACCAactgtatgtgaccaggtgaaaatagctttccaagccaaaccgctacacacagcctatagctaatagaactaacgtgttagtaaacccgctacaatcatgcagtaacgttagtcagtcatttttaaaaattgaagcttttatttaactaggcaagtcactaaagaacaaattcttatttacaatgacagtctacttGTAAAGACCCCCCGGCCAAGTCCTCCCCTAACCCAAACggcgctgggctaattgtgtgccgccctatgggactcccaatcacggccaatACTCCcgatacagcccgggattgaacctgggtctgtagggacacctctagcactgtaatgcagtgccttagaccgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479308 lncRNA upstream 12951 44931051 ~ 44931610 (+) True G1296452
TU1479302 lncRNA upstream 19475 44924872 ~ 44925086 (+) True G1296446
TU1479267 lncRNA upstream 78483 44863552 ~ 44866078 (+) True G1296412
TU1479264 lncRNA upstream 83226 44861055 ~ 44861335 (+) True G1296410
TU1479180 lncRNA upstream 268518 44675750 ~ 44676043 (+) True G1296334
TU1479285 lncRNA downstream 3839 44997734 ~ 45000672 (+) True G1296430
TU1479381 lncRNA downstream 96271 45090166 ~ 45096521 (+) True LOC110490132
TU1479384 lncRNA downstream 98541 45092436 ~ 45144752 (+) True G1296527
TU1479470 lncRNA downstream 196199 45190094 ~ 45191164 (+) True G1296611
TU1479482 lncRNA downstream 214914 45208809 ~ 45209014 (+) True G1296623
XM_036944427.1 mRNA upstream 96047 44737533 ~ 44848514 (+) False LOC110490127
XM_021563325.2 mRNA downstream 96250 45090145 ~ 45151979 (+) False LOC110490132
XM_036944437.1 mRNA downstream 96250 45090145 ~ 45151980 (+) False LOC110490132
XM_021563326.2 mRNA downstream 118579 45112474 ~ 45151604 (+) False LOC110490132
XM_021563327.2 mRNA downstream 164174 45158069 ~ 45174534 (+) True LOC110490134
XM_021563330.2 mRNA downstream 198998 45192893 ~ 45196185 (+) False LOC110490135
TU1479009 other upstream 292482 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 363513 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 618382 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 914700 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1028082 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1260444 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1320357 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2575935 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2952473 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3365933 48359828 ~ 48360439 (+) True kiss2

Expression Profile