RNA id: XM_021563326.2


Basic Information

Item Value
RNA id XM_021563326.2
length 1902
RNA type mRNA
GC content 0.57
exon number 14
gene id LOC110490132
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45090145 ~ 45151980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGAGGAGCGGAGGCCGAAGCAGTGCACTGTGGTTCTGCCCACGGAGTCAATGAAGGCCATGGCAGAGTCCATAGGAGTGGGGCAGCTACAGGAGGAGAGCTGTGCCGCCCTGAGCGAGGAGGTCAGCTACAGAATAAAGGACATCGCCCAGGACGCGTTGAAGTTTATGCACCATGGAAAGAGATGTAAACTGACGACCAGCGACATAGATCATGCTCTTAAACTGAAGAATGTAGAGccTCTCTATGGCTTCCAGTCGCAGGAATTCATCCCGTTCCGCTTCGccagtggaggagggagagagcttCACTTCTACGAGGAGAAGGAGGTAGACCTCAGTGACATCATCAACACACCCCTCCCTAGAGTCCCCCTTGACGTTTCGCTCAAAGCTCACTGGTTCAGTATTGAAGGTGTCCAGCCTGCGATACCAGAGAACCCACCCCCAGCCCCCAAAGAGCAGCAGAAGACTGAATCTACTGAGCCACTCAAAGCCGTCAAGCCTGGTCAGGAGGAGGAGGGCGCCATCCAGAAGGGCCAGGGAGCTACATCTGCAGAGGCTAAAGGAAAGAAGGATGGTCTGATGAGGATGAAGCCCCGCAGTACTCACGAGCTCTCAGTGGAACAGCAGCTCTACTACAAGGAGATCACGGAGGCCTGCGTCGGGTCCTGTGAGGCCAAGAGAGCTGAGGCCCTACAGAGTATCGCCACAGACCCCGGGCTCTACCAGATGCTTCCCAgattcagcacttttatttctgAAGGGGTCCGTGTGAACGTGGTGCAGAACAACCTGGCCCTGCTCATCTACCTGATGAGGATGGTTAAGGCCCTCATGGACAACCCCACTCTCTACCTAGAGAAATATCTGCATGAGTTGATCCCAGCGGTGGTGACGTGTATAGTGAGTAAGCAGCTGTGTTTGCGGCCTGACGTGGACAACCACTGGGCTCTGAGGGACTTCGCTGCCCGTCTGATGGCCCAGAGCTGTAAGACCTTcagcaccaccaccaacaacatccAGTCGCGCATCACTAAGACCTTCACCAAGAGCTGGTTGGATGACAAGACTCAGTGGACGACACGCTACGGCTGTATCGCTGGACTGTCTGAACTAGGACCTGACGTGATCAAGACGTTGATCCTGCCCAGGCTCACTGTAGAAGGAGCTCGTATCAAAGCTGTGTCTGATGGACCTGTTGTCTCCAACATTGATAAGATAGGAGCAGACCACGTCCAAAGCCTTCTACTGaAACACTGTGCCAGCGTCATCGCTAAAGCTCGTCCCCTGCCTGACAACGTGGAGCAGTACCGGGCTGACTACGGTTACTTGGGGCCCATGCTGTGTTCTCATGTGGTCAAGGCCAGGGCCCAGGCAGCACTACAGGCCCAGCAGGTCAACAGAACCACACTCACCATCACACAGCCTCGGCCCACCCTAACAGTGTCTCAGAGCGGAATAGGAGGGTCAGGGGGGTCCCGTACCCCCAGCATCATCAAGGTACCCAGCTCCCTCACCCTCATGTCCACCCGACCAGGCACCCCAACACAGCCATCGCCCCCAGCAACCAAGTACATCGTCATGGCAACCAGCTCAGGATCATCTTCCACCCAGCAGGTGATCACTCGGACTTCCTCCTCAGTGACCAGTACGGTCGCCAGCGCTACCTCCACGCTGCAGCCTCTGGTCAAGCTGGAGTCCGGAGGGTCCGGCGGCCTGGGGGGGTCGCGACCCCTCCAGAAGTACATTGTGGTGTCCCtcccctcgtcctcctctctGGAAAGTAAGAGTGGGgtgctccctccctcttcttccgCCTCCCCCATCTTGCTGGAAGCCAGGATAAAGGTGGATTGCTCAGACTCCCCCGGCGCCAGCACACAGTCCCCGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479381 lncRNA upstream 15953 45090166 ~ 45096521 (+) True LOC110490132
TU1479286 lncRNA upstream 111802 44937205 ~ 45000672 (+) False G1296430
TU1479285 lncRNA upstream 111802 44997734 ~ 45000672 (+) True G1296430
TU1479337 lncRNA upstream 126002 44986018 ~ 44986472 (+) True G1296481
TU1479318 lncRNA upstream 133183 44945562 ~ 44979291 (+) True G1296462
TU1479470 lncRNA downstream 38490 45190094 ~ 45191164 (+) True G1296611
TU1479482 lncRNA downstream 57205 45208809 ~ 45209014 (+) True G1296623
TU1479557 lncRNA downstream 171916 45323520 ~ 45323774 (+) True G1296689
TU1480345 lncRNA downstream 182427 45334031 ~ 45334294 (+) True G1297355
TU1480407 lncRNA downstream 267816 45419420 ~ 45419642 (+) True G1297413
XM_036944433.1 mRNA upstream 118579 44937985 ~ 44993895 (+) False LOC110490129
XM_036944434.1 mRNA upstream 118579 44938304 ~ 44993895 (+) False LOC110490129
XM_036944435.1 mRNA upstream 118579 44944561 ~ 44993895 (+) True LOC110490129
XM_036944430.1 mRNA upstream 263960 44737535 ~ 44848514 (+) False LOC110490127
XM_021563327.2 mRNA downstream 6465 45158069 ~ 45174534 (+) True LOC110490134
XM_021563330.2 mRNA downstream 41289 45192893 ~ 45196185 (+) False LOC110490135
XM_021563332.2 mRNA downstream 41289 45192893 ~ 45196185 (+) False LOC110490135
XM_021563328.2 mRNA downstream 41291 45192895 ~ 45196185 (+) False LOC110490135
XM_021563329.2 mRNA downstream 41292 45192896 ~ 45196185 (+) False LOC110490135
TU1479009 other upstream 460395 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 531426 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 786295 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 1082613 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1195995 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1102735 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1162648 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2418226 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2794764 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3208224 48359828 ~ 48360439 (+) True kiss2

Expression Profile