RNA id: XM_021563328.2


Basic Information

Item Value
RNA id XM_021563328.2
length 1979
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110490135
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45192893 ~ 45196185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatgATCAAGTGGCCCCTTCACATAACTTATCTACCGCTGTAGCAGACTTCACGGTGCACTGATGCAGCCCTTTCGCAACAAAAACATGCAGACAAGGATATATATTTTACTGTGAAGAATTATTGCAAAGTTAATGGACTTCATGACATTCTTTTGGATACGAAAGTGCAATGAGTGAATAACTTTCTACCGGGTTTAATAACAGAGGCTTCTGGGAGAACAACAACAACCAAAGGTTCTGAAGTCTGAACGCACCCTGgtactgacctttgacctctagcCATGTCTCAGAGTAACCCCTCCTTCCAGCTCATCCAGACTCTGAGGAAGTCTCCCGCTGTGTTCCGCCGCCGGTTCCACCTCCGGCCCAACCGCACCGCTACCCTCTCCCACGGGGATCCCCTCTACAAGGTGCTCTACCTGGGCACTGAGAAAATCTACTCCCTGGATCTGGAGCAGGCCCAGGGGGCCATAGGCCTGCTGCTCCAGCAGTGGGCCCCGGGGGCCCCTGAGAAACTGTGCAAGGAGCACGCTCTGGTGTTGCGGCGGCGTTACATAGAGGTGAAGGAGATTGCCACGGGGAGACAGCTCGCTAAGACCTATCTGAGAGACATTGCGTTCTGCGCGGCCGACACCAAGCACCCCAATGTGTTCCTCTACATCTGTAAGCAGCAAGGCCAGCAACTGCAGTTACAGTGCAAGATATTCTGGTGCACCAGTGCTGAGAGAGCTAAGGACATCACCGCTTGTCTGGCAAGGAGCTTTCAAACGGCTCTTAGTGATTGGCAGGGGCAGGGTAGCGAGACCAATCACATGGAGAAAGGGGAGGGATCATCGGAGGTGGATGGACTGTCAGTCATCCCAAGCCTTCATACTAATACCTCCTCTGCTCTATCAGGAGCTCTAAGGACAGGTCGCTGGAGGAGGAGTAGGGGTGTGGCTACTCTGTGTCCTCTCAGAGCGatgaggaaggagaggacaggcaGCACCACCACCAATGACAGCACACAGTCAACCATTTGATATTTGACTTTGACTCTCTCTGCCAACTGATAATCTATTGGGCCGAACAGAGCCTCACTAGCTCCTGCAGTACCCACCAGTATTGAAGAATGGACCACTGCCAAACTAAGCTTGGAGCCCAGAactacattttgtgtgtgtgctggcCAGCTGCACTGTGTGTCTGTCATGAGAGACTGCTGCCAAACATATTCTTATTATGGACTTGAATAAAGCTAAGGGTGTGACTCAAAAGCCCCACATGCCACAGAGCACCCCTTTATCACCACCAACAGGATCATTGTGTTTACGCCTGAGCACTATTTTGGCTTGGtttgaattttttattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaagttaaatgggtttccattgcattttcaactctactgatggctTTGTTACCAAGAAAATTGACTTATGTAGTgagtgtgcccactctggtattggcacgtTCACATTAGCCAACAGCTCgcataatacagtacacatatagcctacatgatgataTTACTATGGACAAAAGAGcgagattatttttatttatcaaaCAGCAGCCAAGCATCAATCATCGTGTCACCAGCATAAGAGCCTCAATATTTATTgcaaaggagcatcaagctcatcactttgcactttcaccatcctgtgcagttcatcatcatttatttaatctgtagcctaataaactgcagcCTAATAatgctttcccgagtcgtagtgggaggaccacacatgtCATTGCGTGATtccaaatttgatttgatataaaggTCATTCCCAGCTAGCACAGAACGTTCCTGTAACGTTCCCTAAAGGTTCTCCTTTGGTTCTTAGAAAAATAACTTTCACAGAATGTTCTTTGACAGAGTTGAAAGTGCATGAGAAAACAATACATTTACTAAGTGATTAATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479470 lncRNA upstream 1731 45190094 ~ 45191164 (+) True G1296611
TU1479384 lncRNA upstream 48143 45092436 ~ 45144752 (+) True G1296527
TU1479381 lncRNA upstream 96374 45090166 ~ 45096521 (+) True LOC110490132
TU1479285 lncRNA upstream 192223 44997734 ~ 45000672 (+) True G1296430
TU1479337 lncRNA upstream 206423 44986018 ~ 44986472 (+) True G1296481
TU1479482 lncRNA downstream 12624 45208809 ~ 45209014 (+) True G1296623
TU1479557 lncRNA downstream 127335 45323520 ~ 45323774 (+) True G1296689
TU1480345 lncRNA downstream 137846 45334031 ~ 45334294 (+) True G1297355
TU1480407 lncRNA downstream 223235 45419420 ~ 45419642 (+) True G1297413
TU1480410 lncRNA downstream 234020 45430205 ~ 45430471 (+) True G1297416
XM_021563327.2 mRNA upstream 18361 45158069 ~ 45174534 (+) True LOC110490134
XM_036944437.1 mRNA upstream 40915 45090145 ~ 45151980 (+) False LOC110490132
XM_021563325.2 mRNA upstream 40916 45090145 ~ 45151979 (+) False LOC110490132
XM_021563326.2 mRNA upstream 41291 45112474 ~ 45151604 (+) False LOC110490132
XM_036944435.1 mRNA upstream 199000 44944561 ~ 44993895 (+) True LOC110490129
XR_005036353.1 mRNA downstream 90556 45286741 ~ 45286928 (+) True LOC118938959
XR_005036355.1 mRNA downstream 90984 45287169 ~ 45287285 (+) True LOC118938961
XR_005036315.1 mRNA downstream 100351 45296536 ~ 45299495 (+) True LOC110490136
XM_021563336.2 mRNA downstream 142365 45338550 ~ 45376332 (+) False LOC110490137
XM_036944440.1 mRNA downstream 142365 45338550 ~ 45376332 (+) True LOC110490137
TU1479009 other upstream 540816 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 611847 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 866716 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 1163034 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1276416 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1058154 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1118067 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2373645 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2750183 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3163643 48359828 ~ 48360439 (+) True kiss2

Expression Profile