RNA id: XM_021563360.2


Basic Information

Item Value
RNA id XM_021563360.2
length 5318
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110490152
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45790639 ~ 45831089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCCATGTATGTTGCGGGGGGTATCGAGTGGCCCTGGCCGTTTCTATTTTCAGAGAGTGCTCTGGATGACTGAAACACCGCAACATGGAGCGAGCTTCGAGACACAACATGCAGGagGTGGTAGAACAGGGTATGTTTGTGAAGCACTGCAAGGTGGAGGTGTACCTCACAGAACTGAAGCTGTGTGAAGACCGCAACATGGACAACGTGGTCACCAGACGCTTCAGCAAAGCGGACACGATAGACACCATTGAGAAGGAGATGCGTAAACTGTTCAGTATCCCagacgagagagagaccaggTTGTGGAACAAGTACATGAGCAACACGTTCGAGCCTCTGAACAAACCGGACAGCACCATACAGGACGCAGGACTCTACCAAGGACAGATATCCATGCAGGTCCTGGTAATAGAGCAGAAGAATGAGGATGGATCGTGGCCTAGAGGTTCCTCTGCACCTAAGTCATCTGGTACTTCCAATCTTTCTGCTTTGCCAAAGATCTCCCCTTCATCTCTCACAAACAATCATAACAGCAGCTTCAACAGCAGGAATGTGAAAAACTCCAGCTACAGCCTTCCGTCCTACCACCCTTATAACAGCTATGAGTGCTCCGAGGGCAGGCAGAGTGAGCGGGCTGGCCTGTGTGGTCTTTCCAACCTGGGAAACACCTGCTTCATGAACTCTGCACTGCAGTGTTTAAGTAATGTACCTCCTCTCACCGAGTATTTCCTGAAAGACAAGTACAACGATGAGTTGAACGAGGACAACCCCCTGGGAATGAAAGGGGAGATCGCCAAGGCCTACGCTGAGATCACCAAGCAGTCGTGGTCTGGGAAGTACAGCTACGTCACACCACGGCCTTTCAAGaccCAGGTGGGTCGCTTCGCCCCCCAGTTCTCAGGCTACCAGCAGCAGGACTCTCATGAGCTGCTGGCCTTCCTGTTGGATGGTCTACACGAGGACCTGAACCGCATCAGGAAGAAACCCTACATCCTGCTCAAAGATGCTGAGGGCAGGCCTGACAAGgtgGTGGCCGAGGAGGCGTGGGAAAACCACATCAAGAGGAACGACTCCATCATCGTGGACATCTTCCACGGCCTCTTCAAGTCCACCCTGGTGTGCCCTGTCTGCGCCAAGGTCTCCGTCACCTTTGACCCCTTCTGCTACCTGACGCTGCCGCTGCCCATGAAAAAGGAGCGCACTCTGGAGGTCTACCTGGTCAGGCTGGACCCCCTGGCCAGACCCACACAGTATAAACTGACTGTGCCCAAGGTGGGCTACATATCAGACCTCTGTACTTCGCTCTCCACTCTATCTGGTGTCCCTGCTGAGAAgATGATTGTAACAGATATCTACAACCACCGGTTCCATCGTATCTTTGCCACCAATGAGAACCTCAGCAGCATCATGGAGAGGGACGACATCTATGTCTTTGAGGTGGCAGTGAACCGGCTGGAGGACACAGACCATGTGGTGATCCCAGTCCACCTTAGAGAAAAGTACAAGCAGTCAGGGTACAACCACACCTCCACTCCTCTGTTTGGCCAGCCCTTCCTCATCACTGTCCCCAGAACACTCAGCGAGGACAAGCTCTACAACATGCTGCTGCTACACCTCTGTCGGTTTGTGCGTTCTGTCGTTGAGGAGGACGACACTGAGGAGACAACCCCTTCTTCTAAACAACATATTGtcaatggcaatgctaccaatggGGTCCTGGAGGAGGGCTCTCCCAGCGAGATGGAGACTGATGAGCAGGATGGAGACGACGAATCCAGTCAGGACCAGGAGCTGCCCTCTGAGAATGACAACAGCCAATCAGAGGACTCTGTGGGTGGTGGGGACAACGAGCTGGAGAATGGGGTTGGTCCAGGGGGAGAGAACTCGGGGACCAAAGGTCACCAGAACCAAACGTCTATGACGATGGGGGAGAAGAAGAGATTGTTTACATTCCAGTTTAACAACATGGGCAAGACTGACTTCAGCTTAATCAAGGAGGAACCGCGGCACATCCGGTTCGACGAGGGAcacctcagactcagtgacCAGTCCTATCTCTCTTTGGACTGGGAACCAGAGGTCAAGAAAAAACACTTTGATGAGGGTATCACGGAGGACTTTGAGAAGCATGAGAGCATGGAGTATAAGCCTCAGAAGAAAGCCTTCTTCAAACTGAAAGACTGCATCGAGCTGTTCACCACCAAAGAGAAGCTCGGAGCCGAGGACCCATGGTACTGTCCAAACTGCAAGGAGCACCAGCAGGCCACTAAGAAGCTAGACCTGTGGTCTCTGCCTCCAGTCCTGGTGGTCCATCTGAAACGCTTCTCCTACAGCAGATATATGAGGGACAAGCTGGATTCACTAGTCGACTTCCCACTCAGTGACATGGAAATGTCAGAGTTCCTGATCGACCCTAATGCTGGTCCCTGTCGCTACGATCTCATTGCGGTCTCCAATCACTATGGAGGCATGGGAGGAGGACACTATACTGCTTATGCGAAGAACAAGGATGATGACAAGTGGTACAACTTTGACGACAGCAGTGTCTCTCCAGCCAACGAAGATCAGATAGTGtccaaAGCAGCGTACGTGCTGTTCTACCAGCGCCAGGACACAGTGAAGGGAACAGGCTACTTTAATCTGGaccgagaggaggaggaggaggaggaggagagagaggaggaggtggaggagaacagagaagggaaggaggagaggaagagcgtCGCCTCATCCCAGGGAGCCTCTGCTTCAGTTCAGAGCGACGAAGAGGATGTCAACGACAATGTCACCATGAAAACCAAATGAGCTGGAGAAacggagacagagcgagagacaatAATATCCATCCTAAGCCATATCGACAGACACAGAGCAGTGTGCCAGGCCTGAGGCTGATCTCTGACACCATCCAGGCCTACAATGAGTGGGCTACCAGGGGAAACTAACCACTGAGAAGTTTGTTAGTGCTGGAACACCGAAGCAACATTACTAAAGAAATCAGGGCCTATAGTTGTCTGTGGTCCGTCCGACCGGTCTTATTCGGGTCGCAGTGATTCTCCTCCATGTCCATTCTACATGAATCATTCACTCTGGAGGAAAAAGATGTCAAGCTCTGTTCTGATTCTGAACAAGGACATCATACTGAAATCGAATGGATCCATTAGAAGTGTTAGGAAGGCCAGAGTTCAGTACATCATAGTATCAAACACAGAATGTCACAGTGCAGTGGTGTCACTGCTTTGGCGCTTCGAACCgatactccctctctcccacccacctGCTTTAATTTTGTTATGTTTTTATATTTCTGAGAGAGCAATGCATTGGCATACCATTATTTTTAAGCTAGGccttgtaaatattttttttgaatgaacactgaattattattattattaagtttTCATGATGCGCTGAAGCCTTTTTGGGGATTCGTCCTTACACTTTTATTTTGTTGCACAGTCACCTGCACTCCCTTTTTTTTATAATGAATTGAATATTAGTGCCACATACTGCAATTGTTTTACAAATTACTCTGAGCCAAGGTCTTCTCAGTTAAAACGCTTTGAACGCTGCCTTTAAACACTGTGGTCAACAGAACACGCATCCACACATAGTGACTGCTCTGTGTAGattaagagtgctgatctaggatcatttTCAACCTTTatgatcataatgaataaggttatatggacaggggggacctgatcctagatcagccctccTACTCTGCTTTGTGTAtgtgaggaggaagaagaagagcaaAATACATTTCATAATGTAAAACAGCCAAACTAGTCATGTGGTGAACTTCCATTTTAGACACACAACTAATGTACACAATATGAGCCTTGTGATTAAGTTctgttatttttttttcttctgctgGTCACTACAGTAAGTATCCTCCAAGCCGCATGAAGCCAAGGTCAAGGTCCAGAAACAACCCTTAAACCCCTAGACACTTTTGTAGATCTGAAATCATCAGATGGGGGTGAGAAATGGGGCGAAAAATTCACCTTACCTGTCACATGACAAGTTGGCTACCATATTGCTTACATCCAATTCTTTCAGATCTTCGTAAGTGATTAGGAGACGTGTTTGCTTAGGAGGTAAGGGCTTTTCTGGGACGGACCCACCTCTTAGGCTTTATGTTGCGTTACTAGCTTTACACGGCTTATTGAgcctctcctccactacctgcTCCTTCTAGAGGCTTTTTGAGATGATGAATATTGGTGATACATTAGATTTCTGTCTCTTGGTTGGATCACCTCAGCCTTAACTCTTAATCTCAGATTGTAGCCTTTAGCACATTATTACGTCACGTTGTCTGTGCATGGCCCCGAAACACAAACGCACGCGCACCTACACTTAAACAGGACACCGATACGAGCTGAAACTAATTCCTACACTCACAGGAACACTTATGTACACACCCTCACACCCTGTCTTTGCTGTCCCCAATAGAAACATCCATGAATAGCGACCGCTGCTACCGGAAATCAAccaattaaaaatatttttaaaaatcaaaCACGAGAGCCGGAATGTATGCTGAATGACTGACTTGAACTGATCCACTTGTAatgccagttttttttttttttgtgcctcTTCTTGTCTTGCTTTGGTTAAATGTGAGGGGGGAACTAGTAGGGGGTTCATTACCTTTGATAGAAATACCTGGGTACTGCTGTATGTGTCCTCTCTTCCAAGGGAAAATAATGCTTCATTGTGGTTGGTGTGTGGAGTAGGGTCTTTCTCTctagagagtgggagggatgggtGAATTACTGATCAGCATGAGTGGGTGAGATGTGGTGATTGCATATAGCATATATAGTACTGTACATAAGAGTTCACTCTGTGAGTGCACATTTgataacatttatttatttatatggaagcatttaaaaaataataaaaaatatatttaaagacCTTGGCAAGATCGAAGATGTAATGGGGATTTGGGTTCATAGACCACAAATTCAGGGTTTTGTCTGAAATGGCGCCGTATACTGCATAGAgctctcgtcaaaagtagtgccctatatagggaatagggtgccatttgggagagaCAGAATTCTTACCTGTGCTTTTCTCTTCTGGGGGATTGGATCTTTTTGACAGGATGTGCTattgttcagattttttttgtaaaggtgaatatattcaggcaTCCTTTGCATGACATGGGGGTTTCCAGGTTTGGCTGCGCTTGAGTTCACTTGGGTTTACATTTGAAATGTGCATGTATATTTACACACAAACTTCAATAAAGTTGTGTAAAGCCTAGAA

Function

GO: NA

KEGG:

id description
K21343 USP15; ubiquitin carboxyl-terminal hydrolase 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1480684 lncRNA upstream 180611 45612678 ~ 45612909 (+) True G1297679
TU1480680 lncRNA upstream 181742 45611540 ~ 45611778 (+) True G1297675
TU1480523 lncRNA upstream 200497 45592824 ~ 45593023 (+) True G1297523
TU1480505 lncRNA upstream 223651 45569558 ~ 45569869 (+) True G1297505
TU1480500 lncRNA upstream 233406 45559835 ~ 45560114 (+) True G1297500
TU1480956 lncRNA downstream 224804 46055893 ~ 46083785 (+) True G1297935
TU1481341 lncRNA downstream 280215 46111304 ~ 46111572 (+) True G1298287
TU1481347 lncRNA downstream 283424 46114513 ~ 46114801 (+) True G1298293
TU1481350 lncRNA downstream 284500 46115589 ~ 46115957 (+) True G1298296
TU1481372 lncRNA downstream 299157 46130246 ~ 46130475 (+) True G1298318
XM_021563354.2 mRNA upstream 3166 45762776 ~ 45790354 (+) True LOC110490150
XM_036944442.1 mRNA upstream 31126 45718442 ~ 45762394 (+) False LOC110490148
XM_036944446.1 mRNA downstream 70994 45902083 ~ 45938805 (+) True il17rel
XM_021563365.2 mRNA downstream 337282 46168371 ~ 46172817 (+) True LOC110490155
XM_021563367.2 mRNA downstream 429504 46260593 ~ 46268733 (+) False alg12
XM_036944447.1 mRNA downstream 429504 46260593 ~ 46268733 (+) True alg12
XM_021563371.2 mRNA downstream 462493 46293582 ~ 46316075 (+) False brd1a
TU1479009 other upstream 1141441 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 1212472 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 1467341 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 1763659 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1877041 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 423250 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 483163 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 1738741 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2115279 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 2528739 48359828 ~ 48360439 (+) True kiss2

Expression Profile