RNA id: XM_021563370.2


Basic Information

Item Value
RNA id XM_021563370.2
length 5233
RNA type mRNA
GC content 0.51
exon number 14
gene id brd1a
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 46293582 ~ 46316075 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCGTCACAGTTTACATCCGATGAAATATCgggctcattgttctatctgtgtgtATAATCTGTGTATCTACGCTACAACATGACCTATAGTGTACGTCGTTGCGTCGTGCGTAGCGGGTGGGACAACGCTCGTGCACTGCATTGTTGTGGGGGGAGAGCTCGAGCTTGCAGTTGCAGCCTCGAAATGGTTCCAGGCTATAGGGAAGAAGCCAATTCAGATCCTTGAGAAAATGCTTTTATGCTCATGATTAGAACCCAGTTTAGTATTTAACAAGACCCAGAGGGCTCCCAACTGCATTCTTCTTCTTTATTACTGAAAAAGCCTAAGCATCTCCCGCTGGATGAGAACATTGTGTACGGAATTACAGCCACTGAGCAGGCCACATCGCCATTGCTTTCAAAGGCTGTTGACAAGCTACTATCTACAACCAGCAAAGCTGTTTCTAGTTCTAagCTGTTCAGGTGTCGAGGATGAGGAAGAAGGCTCGGCACCACAGGGTCCCTGAGCCCCAGCGGCCGCCCTCCCCCATCCAGCCGTCCCCCAACAAACAGACTCTGACCTATGCCCAGGCCCAGCGCATGGTGGACATGGAGATTGATGGCCGGATGCACCGGATCAGCATCTACGACAAGCTGGACGTGATCTCGGATGATGACCCTACGGCTCAGGAGATTATGGAGTGCACCAGCAACAAGGAGAACACGGAGAAGCCTCAGCAGACGCCAATGCGCTCCGTCCGGTTAAAAAACAACCAGGAGAAGAGAAGTGCAGCTGCGGTCGCACAGAACCACACAACACGTGGAGCTGCAGCAGCACCAGTACAGACACTTCCAGAGGCCAAGGTCCGGACGGTGGAGTATAACCTACCAGCGGTCCCCAGGAGGCCCCCGGTGTACTATAAGTATGTGGAGAAGACGTCAGAGGAGTTGGATGAGGAGGTGGAGTATGATATGGATGAGGAGGACTACGCCTGGCTGGAAGTAGTTAACGACAAGAGGAGGAGTGAGGGCGTCAGTCAGGTGTCCCACAACGTGTTTGAGTTCCTGGTGGACCGCtttgagaaagagacacagatGGAGAAGGTGAGCCAGGGCCAGGACAAGCTGACCATAGACGAGGACGCTGTCTGCTGCATCTGCATGGACGGAGACGGCCAGGACAGCAACGTCATCCTCTTCTGTGACATGTGTAACCTGGCCGTGCACCAAGAGTGTTACGGTGTCCCTTACATCCCAGAGGGACAGTGGCTATGCCGGCACTGCCTCCAGTCGCCCACCCAGCCTGCAGGCTGCATACTGTGTCCTAACAAAGGCGGAGCAGTGAAAAAGACTGACGATGACCGCTGGGGTCATGTGGTGTGCGCCCTGTGGGTGCCGGAGGTAGGGTTTTCCAACACAGTCTTCATCGAGCCCATCGACGGAGTCAGCAACATACCGTCCGCTCGCTGGAAGCTCACCTGCTACCTCTGTAAGGAGAAGGGGGTGGGGGCCTGTATCCAGTGTCACAAGGCTAACTGCTATACAGCCTTCCATGTCAGCTGTGCTCAGAAAGCAGGACTCTTTATGAAGATGGAACCAATCAAGGAGTTTACAGAGACCGGCGAACCAACGTTTTCGGTGAAGAAGACTGCTTACTGTGGGGCTCACACCCCCAACAGCTCGGTCAGACGACCTCTCACCATCTACGAGGACGCCAAACCCCAAAATGGATTGTGTTCCCCTCTGAAAGGGGAGAAGATGAGGGGCGCCAATGCACTGACGAaaggcaggaagaggaagagcaaGAAGGTGGAGCCAGAGGAAGAGGTCCCACCCGTGGCCGTGCCTAGCTTTCCTCCCCAAAGGTTAAACACCATCCTCAACCGGGTGTCTATGCAGAAAAAGAAGGTGTTTGTGGAGCTGGCTCTAAACTACTGGACTCTAAAGAGACAGGCGAGGAACGGAGTACCCCTCATCAGACGACTACAGTCCAGCCAACAGTCCCATCAGAAGACCCATGCTGCACAGCCGaaggagagtgaggaggagagccGGGCTCTGAAGGAGCAGCTCAAGGAGTGGCATTGTCTAAGACATGACCTGGAGAGAGCCAGGCTATTGCTGGAGCTCATACGCAAGAGGGAAAAACTCAAGAGAGAAGAGATGAAGCTGCAGCAGAGCCTGTTAGAGGTCCAGCTGACTCCCTTCAGTATCCTGCTCAGGTCTGTGTTGGAACAGCTACAAGAGAGAGACCAGTCCTTGATCTTTGCCCAGCCTGTCGACATCAAAGAGGTGCCTGACTACCTTGACCACATCAAGAACCCCATGGATTTCTCCACTATGAGGAAACGCATTGATGACCAGGCCTACAGCAACCTGGATGACTTTGAGTCTGACTTCAATCTCATCATCTTCAACTGCATGAAGTACAACTGCAAGGATACCTTCTTCCACCGGGCGGCCGCCCGTCTCCGAGACCAAGGTGGGGCTTTGATCAGGAAGACGCGGAGGGATGTGGAACGAATCGGCTTCGAGAAGGACAGCGGGATGCACCTGCCCGAACCGCCCAAGATCGAAGCGCCTCCACCATTTTCCTGGGAGGACGTGGACCAGTTATTGGTCCCAGCCAACCGGCAGCACATGCCTCTGGAGGAGCAGCTGAAAGAGCTGCTGGAGAAACTGGACCTGACATTCTCCATGAAGTCCAGCCCGTCACGCTCCAAACGCCTCAAGCTGCTCAAGAAGACCATCAACGACGTGCGCAGCGAGATGAGCTTCGGCCTGAGGAGGGCGTCCCACCACTCCCATTCGCATTCTTCTTCCTCCCAGCCAGAAAGGAGTAAAGCTGGGGAGGCAGAGTGTGTGAAGACCAATGGACAGAGTCCTGATAATGAGGGGGACAAATCATTACCTCCCAAATTGGAACCCTCTGACTCCCTAACTCCTCTCATGCACTTCGAGAGTAACTTAGAACCCCCTACCCTCAAACCCATCCACACCCCGGACAGCAAGACCCACGGACAGGTCAAATTTGACCGAGAGAAACCCAACAACGCTTCCTCCACcactacccttctcaatggccaCTCCGACTCCCAGAACCCCCTGCTTCTTTCAAAGGGGGACGTGAGTGTGGTTGCCACCTCCACCCTGGCCCAACCCTCGGGGACGACTGTCAACCGCCGCACTGCCGTGCTCTTCAGGAAGTCCAAGACCTCTAGCCCTGGGAAGAAccagggggggagaggaggcgaTGAGGCCCAGACAGGGTGCCCTCAGCTGGGCACCAAGACCTTCCTGTCGGTAATGATCCCCAGGCTGGAGACCCTCCTCCACCCAAGGACTAGGAAGAGGAGCCACAGTCCACGTGGGGTGTACGgcgaggggggtggagacagggaggacgAGTCCCCTGTCAAACACATTAACACAGGCCTGTCTAATGGTTTTGCGATGGAGGAGGTAATTGATGAAGAGAAGGAGCTAAGTGCCAGCAGGCCTCTAGAAACCAGGAGACGGTGTGCCTCTGAGTCTAGCATCTCATCTAGTGGTAGTCTGCTGGGCAGCACTAGCAGCACCCTCAGTCTTCCAGCATGTGGTAAAGGCAAACCGGCCCTGGTCCGAAGAAACACTGTGGATGATAAGAACGACCTCATTGCCTGTATAGAAACCGGGAACTTTGCCAGAGCTGCTAGGATTGCCGCCGAAGTTGGCAACAGCAATATTTGGATGCCTGCTAGTGCTGCAACAGTTGTTCTGGAACCTCTAAAGCTAGTTTGGGCAAAATGTAGCGGATACCCTTCCTATCCTGCCTTGATCGTCGACCCCCACATGCCCCGGGTGGGGTGCCAGCACAACGGGGTGTCTATCCCCATGCCCCCCCTTGACGTCCTCCGGGTCGGAGAACGGATGCAGTACAAGAACGAAGAAAAACTCTTCCTCGTTCTTTTCTTTGACAACAAACGCAGCTGGCAATGGCTTCCTAAGTCTAAGATGGTCCCACTGGGGATTGACAAGACCATCGACAAGATCAAGATGATGGAGGGCAGAACGTCCAGCATCCGTAAGGCTGTTCAGACGGCCTTCAAACGTGCCATGAACCATCTTAGCATCGTTCAGGATGAACCTGTCAGCGACATGAGTGACGTggactaacacacacaaacacacacacacacacacacacacactctccattaCACACAGACACCCAACCCCCTGAATTACTGCTCATGGCCTTGTCCTGTACCGGAGTCTGGcatactctccttctcctcttcgtCAGTCTTTCCAGAGTTCTATGCTGACTGTGTTTACCAGGTGCCTGGCTACCCTCTTGGCTTGATATGGTGCCTCCTTCCTCGTCAGCCCCCGCCCGCTGGTCTGACGGCTGCTGCTTTAATGAATGTGCCCGAGTTCCCCTCCTATCAACCTTTCTCCAAGGTCGTGTTCTAATTGAAAACTAATTGAAACAGGGTGGGTTTAATGGACTTGCCCAAAAAGAAACGCTCATTTCCGTTTTCTTTCAAAACAGTTTTGATATGTTTCCCGTTGTGTTCCATAAGGAACATGACCCCATGACTGTGCTGCAAGACTGCTGCCATGATCCTCCTCTATTCCCTATGACCATGCCACTGCCAAGATGGGCTGCTTCTTCCTCACCTCACTCATCTTACCTTATGCCATTTATTTCCACCCAAAACTACCTACTATGTTTTAAAGTTAACTGTAAATAACTGCAATATTTGTCTGACACACTAACTTATTGTGTAGATTGAAAGAAATTGGTACTGTACAATGGCTTTTCTTACTAGTATTTATACTTTTTGGTGAATTATGTAAGCACCACGGTGTGGTATTTCCAAGTTCTGTGAAAATAAGACGAGTGTAAAAATCCTTAGCAgtgtaaagtgttttttttttcttcctttttttccttttacagtttttgtattttctttaagTTATTGAAGTTTCTAAATATAAGCTTCCCTTTGGCATTAGTtattttgtaatattttttttaacgaTAGTTTTAGTATATTTTGTTCGTACATATTTATATGATtgagtgccttcggaaagtattcagaccccttgactttttgtgaggttacagccttattctaaactgtattaaattgttttttcccacctcatctacacacaataacccataatgacaaggcaaaaacaggtttttagaaatgtttgctaatttataaaaaaataaaaactgatatcacatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1481523 lncRNA upstream 33147 46254339 ~ 46260437 (+) False G1298452
TU1481524 lncRNA upstream 38203 46254339 ~ 46255381 (+) True G1298452
TU1481487 lncRNA upstream 68732 46224638 ~ 46224852 (+) True G1298424
TU1481486 lncRNA upstream 69543 46223832 ~ 46224041 (+) True G1298423
TU1481485 lncRNA upstream 71644 46221714 ~ 46221940 (+) True G1298422
TU1481571 lncRNA downstream 28842 46344917 ~ 46345288 (+) True G1298495
TU1481572 lncRNA downstream 29793 46345868 ~ 46346080 (+) True G1298496
TU1481701 lncRNA downstream 60745 46376820 ~ 46377155 (+) True G1298603
TU1481702 lncRNA downstream 61160 46377235 ~ 46377447 (+) True G1298604
TU1481976 lncRNA downstream 246128 46562203 ~ 46562576 (+) True G1298863
XM_021563367.2 mRNA upstream 24851 46260593 ~ 46268733 (+) False alg12
XM_036944447.1 mRNA upstream 24851 46260593 ~ 46268733 (+) True alg12
XM_021563365.2 mRNA upstream 120767 46168371 ~ 46172817 (+) True LOC110490155
XM_036944446.1 mRNA upstream 354779 45902083 ~ 45938805 (+) True il17rel
XM_021563360.2 mRNA upstream 462495 45793520 ~ 45831089 (+) True LOC110490152
XM_036944453.1 mRNA downstream 1096362 47412437 ~ 47443051 (+) False cerk
XM_036944452.1 mRNA downstream 1096365 47412440 ~ 47443051 (+) True cerk
XM_021563386.2 mRNA downstream 1402843 47718918 ~ 47723038 (+) False srr
XM_021563387.2 mRNA downstream 1403470 47719545 ~ 47723038 (+) False srr
XM_021563388.2 mRNA downstream 1417444 47733519 ~ 47736943 (+) True alg10
TU1481520 other upstream 33147 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 1641505 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 1712536 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 1967405 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 2263723 44029436 ~ 44029861 (+) True G1295845
TU1483075 other downstream 1253755 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 1630293 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 2043753 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 2268632 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 2613971 48930046 ~ 48930588 (+) True G1301458

Expression Profile