RNA id: XM_021563374.2


Basic Information

Item Value
RNA id XM_021563374.2
length 5747
RNA type mRNA
GC content 0.46
exon number 15
gene id tbc1d22a
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47217532 ~ 47405004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGCTAGGCATTGTGAAACTGACCAATCCCTACAGCGCTTGCTCAGACTAACGCAGCTCCAACATGGCGGCGTTCTGAGTTTTGGAGGAGGGAACTGGGCGTAAATAAACACGCTTTAGACTTTTTAAAAACTTTCGGTAACAACACTCGTATTTTTGTGTCTGTGACATATTGTACCAGGGAAAGAAAATGTCAACTGACGGAAACAAGAAACAATTCTGGAAAAGAAATACAGCTAAGGTCCCTGGCAGCATACAACATGTGTATGGTGCTCAACATCCTCCTTTCGACCCTCTTCTGCATGCTAATCTAATCAAAGCGGGCAACAAGCCCCAGACGACACCGGGAGGGAAGCCAAAGAAAGCCACCACCTTCCAGGAGTTTGAGAGCATCACCAGCGATGCCTGGGACGTGGGGGACGACGACGACGAGCTGCTCGCCATGGCCGCACAGAACCTCAACATCGAGGTCGTCATGGAAACCGCCAACAAGGTGATCGAGAACCACAGcaagcagcaggagaagcagagACAGGACGATGCCGACGCGTCAGAGCTGGAGGACCGAGAGGAAGAGGCGCATGAGGAAGAGCagtgggaggaaggggaggaatcGACCCCTGAGGTGTCGTTTGCTTGTGAGCCCAGCCCGCTCAGTGATGGCAAACTGGTGAAGTCACTGAGTGAGGCCCCCATCGGAACACCTAAGGATGCGTCGCTCCACAGACAGCAGTCCCTGCCCCACCGGCCCACCATCCCCATGGTGGCTCGTATAGCTGACCAGAACACCTCCGGGACCCcagccatgacagagagagaggcatccCGCCTGGACAAGTTTAAACAGGTCCTGGCTGGACCCAACACTGACCTTGAGGAATTACGAAAGTTGAGCTGGTCTGGAATTCCGCGCCATGTTCGTCCAATCACGTGGAAGCTCCTTTCGggtTACCTTCCTGccaacacagagaggagagagagcacgctacagaggaagagacaggaataCTTCGGTTTCATAGAACAGTACTACGACTCGCGCAACGACGAGCACCACCAAGACACGTACAGACAGATTCGTATAGACATCCCCCGGATGAGTCCAGAGTGTCTAATGCTGCAGCCTATGGTGACCGAGatccACATTGACATACCGAGAACTAATCCCCTTATTCCTCTCTTTCAACAAGCTTCTGTCCAAGAGATCTTTGAGCGTATCCTGTTCATCTGGGCGATCCGCCACCCGGCCAGCGGCTACGTGCAGGGCATCAACGACCTCGTCACGCCTTTCTTCGTTGTCTACGTCTTTGAGTACATCAaggaggaggtggagaactTTGACGTGTCCAGCTTGCAGGAGGCGGCTTTACGAAACATCGAGGCTGACAGTTTCTGGTGCATGAGCAAATTGTTGGACGGCATTCAGGACAACTACACATTTGCCCAGCCGGGGATCCAAAGGAAAGTCAAGGCTCTGGAGGAGTTGGTCAGCAGGATCGATGAAACGGTGCACATCCACATGCAGCAGTATGAAGTGGAGTATCTCCAGTTTGCCTTCCGTTGGATGAACAACCTGCTGATGAGAGAGCTGCCGTTACGCTGCACGATACGCCTCTGGGACACCTaccaggctgAACCTGAGGGATTTTCTCACTTCCATCTCTACGTGTGTGCTGCTTTCCTAGTACGATGGAGGAAAGAGATTCTGGACCAGAGAGATTTCCAGGGTCTGATGATTCTGCTGCAGAACCTACCCACCATGCACTGGGGCAACGAGGAGGTCAGCGTGCTCCTGGCTGAGGCCTACAGGCTGAAGTTTGCCTTCGCTGACGCCCCCAACCACTACAAGAGATGAGTGTGGGCCCCTGACAGCTAGCTACTTGAACCCCTGACAGAGGCCCCCTGGcggacagatggatggatggaacccctccttgactttcttgtccctctgcagtccACAACCGTTGCTACTCGTAGATGAAAACAAAAACGtttgcatcacaaatggcaccctatcctctACAAAATGcattatttttgaccagagccccaagtagagcactatgtagggaatagggggccatttgggaagcCATTGCTTCTTGGTCTGTGTGTACCGTTCTAACCGACTGTTCTTCTTGACTCCTCTTCTCTTTGTTCTTAACCATGAAATTACATTTGTGCAACACTCCAACAACATCAATGCCTGTCCCATCGAAGTAGACCCCAACCAGAACAGACCTCCAGTCAGTGTGGTAGTGGAGATCTAGCTGCAGACCCATGGATGACTGACTGTTCTAGACTGTCCTGTACTGTTTGTCCGTGACTGCCCACCGTCCCCAAGGAACTCAGACCTTCTCCTAGAGGCCCAGTCACATTGAGTGGATCTCCACAGCAGGCGCAACATGTCCCGAGACCTAATGAATGAATTGTCTGAACGAAccttgtttgtgtgagtgtgtggggggggggggtaagagagagGTCTTTTGTACTTGGTTGATATGTCACTTTTAATTCCTAAGGAAACTGAGGACACATGTCATCATTCTAGTCATTCCTAGCTGGCATCGAGCTCTTTTTTTCGTGTCCGTGCTTTCAGTTCAAAACAAGCAGTCAATCCCCCAGAGACAAGTAGGTTTTAGTTCAAAACAGAAACACATTCACTTAAAAGTGAATAATTAGATCAGGAAGTATCTTATTGTTATGAATGATTTCGTTCTGACTCTGACATGGTCCGCAGGGCTGGATCTAATGATGTCTAACAACACTCTCTGAACTATATTATGTAAGATATGGAATATTTGTCGGTTGGCTGAGGGAGGGACGAGTATCGCGTGACTCTGCCTGACGTACGATCATCTCTGAACCTAGGACTCACTACCTAATTGGTGCTGCACAGTGCAGTGGTGAGCAGTCACCTTTTAGGCCAGGAGATTTCCTAGTGTGGTCACGTAGCCAGAAAACTTGTACCTGTATGTATACGGGTTGGTAATGGCAGATTTGGGCACAATTAAACAACTAAATTGTaatgcagtggctgtacagtaacatgtcaGCACTATGGTTTTTGACTGACGGacattctgaacttgagcacctcgCGCGACCTTGTTGTGAATGTGttttcagtcaatttacctggtaaaataaaaaccccaaaatatatactttttttttttgttgtcttgagTGAGGGAATTGCTGtacattttgaaagatgagaaataccGCTTTAATGTCATGATCTTGCCAAACAcccgtgagtccaaatgtgcacttcacacttccatatcataaaactaaTGTCATACACAGTGTCAACATCtctgatcactatgtttgatatacagttacaagatgaTGTGGCGTCATACTCTGGCTTGTTCTGAACCGAACGAGCCTAATATTTGTCTGTTGTGAAGAAAATTTGCCGCGGCACACGCACCTGAATGCACTCAAGACTCCGTTCTATGTGCACCAGGATTATACATTGCATTCTGAAAGCAAGTAACAtcgtattttataacttagctagtcattttggcaatagaacaagcttttaAATGacgcccacctgacccagattgcaatTTATAAATGGACCGTTTTTGGATTGCGTTAACAACAATAGTAATTGTGTGATGAtggggatgcagggttgtgttccaaacaaaccAAACACAAGTGTATTTGTGCTAGTTtctcaacggcacagctaggagagctcatgAAAGGCACCtttatagttgaagactcttctttgagtcattaaAGTGCTTTGAAATAACCTAGGGAACTATGCACACTTTGAAGAGGTACATGGCCACaaggagacaccagttagtcctctcactcaaacccttgtccttttttttttgttttgtgttgCACCTACCACACATTTTCCAGGAATGTACTTATGTTACTGAATATATCCAGAGTATTTTCGGATTTTATCAACAAATGCAGcgaaagtacagtaaatgtagaATGCACATCAAATCAAGTGTAATCATTTTCCCATAATCTCCTGTTCCCTTTCaactgctaccatggttatgcatatgcttttcatatttcttctcTAAGAAACCTTTCACGTTAGCCGTATCCATAGTCAAATTTCCATGCGTGTACAAAGGGTTAAAAAAATACTTCTCAAAACCCAGAAGTAGGACCATGAGTTTTGTGGTCAGAAAAAAACTTCTGGACTACGACAATTTGTAACTGATCATAGCCCAGAACTAGGGCCCATTCAGTTATTCAGTCTATTCAGGAACACTGACTGTGGATGTCAGGGTGGAATATGTTAACGCTCTCCATTTGCCTTCATTTGACTGCTTAGGGTTTTTATTTGATGTACCAAATTAGTTTCATTAGTTTGTTTTTACCTGGTGTAGAGCCCTCAAACACAACTCTGGACTCAACCCAGTTCCACTCctatttttcattgttcccctctaatcagggactgatttaatcctgggacaacaggtgggtgcaattaattatcaggtagaacagaaaaccaacaGGCTCTGGCCCGCGTGGGTTAAGAGTTGTTATACCCCTTGTGTAGAGGGTGGATATACGATGTAAATTAGACGTTGAAATAATATTATGTACCACTTTTATCGTCAAAAACACCCTGCCAGGTAACGATGAAGACCAATAATTGTTGCATGAACtcctcaatggtgtgtgtgtttatgtgggttGGGAGTGTATGTATAGATGGGGCAGCTTAAATACTCTGTATTTGAAACTCCTCAACTTCTTTTGATCATGTCGGTAATGTTTTTGCGCTCCATGTCAGCTCCAGGCCCAATTTCCTATTCTCACATTGATTAGAAACTTTTTAAAAACTGCACTTGATAAAAGTCCATTTTCTTCCCTTTTTTTGTACGAAATATATTATTTGGAATCAGCTTTAAAAGAAACAAATGTCTTTTTTTTACATACTGTTTACATGAGCCTATTAAGTTGTGCCTAATGTAGAGATAGCAGATGATCATCATAgatatttattttaccttaatttaaGCTCTGCAAATGAAACGAGAACGTTTATTCAGTTGATGCTCTCACACTCTGTTTGCTAAGCCATGACAGTttctgcatccaaaatggcaccctattccatatatagtgcactacttttgaccagatccctatgggccctggtcaaagtagtgcccgatatagggaatagggtgccatttgggacgcaaccgaTGAGTCCACAGAATCGCATCAGTAAGTCTAGCAGCTGCCTTCTCTGGTGTCCTTATGTGTTTCAACTTGGTTTGATGTACCGAACAACCCTTACACACACCTTCGGTAAAAGTCAAAAGCCCCGGGTTGCCATGGTTACGGTGGTGACCGGGTGTCCGTCCGCTGGCTGGAGgcctcggacacacacacacactggacgttGCAGTCAGCATCTCATGGGGCATGACCTAACATGTTTGGGTCTGCCTCCTAAAgcctttttgggggggggttgtatttTACTGTTGCTCGGTTTCTTTTcagagatgttcaaatgtttctGGCCAAACTACGACTGGTCCTCTTTCCCTTCTGACTTCTGACTAAGACATGTGAAAGTGTGAATCTCATACAGTGGAGAGTGATCgtgattttcttttcttttttaaataTGTGTACAGAGAATGAATTTTGAAACAAAGATCTGTAAATAGAAAAGTGTAAATAAATGCTATATATGACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1483218 lncRNA downstream 12875 47204409 ~ 47204657 (-) True G1300028
TU1483212 lncRNA downstream 19645 47197632 ~ 47197887 (-) True G1300022
TU1483211 lncRNA downstream 20094 47197158 ~ 47197438 (-) True G1300021
TU1482594 lncRNA downstream 245914 46822067 ~ 46971618 (-) False tafa5a
TU1483363 lncRNA upstream 21761 47426765 ~ 47426969 (-) True G1300160
TU1483335 lncRNA upstream 87751 47492755 ~ 47503789 (-) True gramd4a
TU1483427 lncRNA upstream 146153 47551157 ~ 47551562 (-) True G1300220
TU1483437 lncRNA upstream 164641 47569645 ~ 47615221 (-) True G1300230
TU1483708 lncRNA upstream 332689 47737693 ~ 47738041 (-) True G1300469
XM_021563372.2 mRNA downstream 222432 46822256 ~ 46995100 (-) False tafa5a
XM_021563373.2 mRNA downstream 264083 46822256 ~ 46953449 (-) False tafa5a
XR_002468765.2 mRNA downstream 498424 46717990 ~ 46719108 (-) False LOC110490845
XM_021563366.2 mRNA downstream 941870 46268990 ~ 46275662 (-) True zbed4
XM_021563369.2 mRNA downstream 957042 46254337 ~ 46260490 (-) True creld2
XM_021563384.2 mRNA upstream 87752 47492756 ~ 47523297 (-) False gramd4a
XM_021563383.2 mRNA upstream 87752 47492756 ~ 47538146 (-) False gramd4a
XM_021563380.2 mRNA upstream 87752 47492756 ~ 47558894 (-) False gramd4a
XM_021563381.2 mRNA upstream 87752 47492756 ~ 47558894 (-) False gramd4a
XM_021563382.2 mRNA upstream 87752 47492756 ~ 47559047 (-) False gramd4a
TU1482596 other downstream 264108 46822263 ~ 46953424 (-) True tafa5a
TU1482577 other downstream 264938 46822263 ~ 46952594 (-) False tafa5a
TU1481624 other downstream 919580 46297068 ~ 46297952 (-) False G1298541
TU1481620 other downstream 919580 46297162 ~ 46297952 (-) True G1298541
TU1481228 other downstream 1228269 45956059 ~ 45989263 (-) True G1298177
TU1483446 other upstream 247506 47652510 ~ 47704038 (-) True celsr1a
TU1485276 other upstream 1430590 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1486102 other upstream 2258947 49663951 ~ 49664296 (-) True G1302602
TU1486703 other upstream 2894460 50299464 ~ 50301007 (-) True LOC110490244
TU1487991 other upstream 3794225 51199229 ~ 51205861 (-) True LOC110490264

Expression Profile