RNA id: XM_036944452.1


Basic Information

Item Value
RNA id XM_036944452.1
length 3321
RNA type mRNA
GC content 0.49
exon number 12
gene id cerk
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47412437 ~ 47443051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCAGTTGGTGAAAAGCAACTGCAGCaactatataaaaaaaactgCATGACCTTAATCACAATTTTTATCATTCACGCAGTCGAGATGTAATTGCTAGTCAAACAATTTGtacaaccataacacaacacactttGAAAGAAGGTATCCAACAGTGCTCAATGGCTAGACAAAAAAATGATCTGCTCGAACGCGCCCGCTCTCTCATTTTGCCTGTCAGCAAAACATTGTTGAGCGATTGAGTTTATGCAACGTGTTTACCTCGGCGTACTGTGAAACACTACACATTGTAACAATGCTCATAAGTGAATTCTTCATTATGGTAGATCAACCAACGTTATTGTCAACGCAACTTTTTTACAAGAACAGGGTTGTAGAAGTGACTCTGAACCGCGTTATGTTGGGATTTTGGAAGGAGATTGAGACGAGGAGAAAACGCTCTGCGAGCTTCAATTGTATTTCTAAAGATGCAGACCACCATTTTCTCCTGGTGTCTGAGATAGTTGGTGCCAGAGagaccaaagaagaagaagaccaaacaaacaaagATGGTGGAAGGAAGCATAGAGTTCTGTTGTATCCGTATGCATTTACAGTGTCCTACACGGAGAGGACCAAACATCACTGCTGGCGGTGTAAAGACATCATCTTCCATTGCTTAGACGAGGCACAGCGTCAACAGTGGGTCCAGACAATCAACAACCAGCTCTCACTACTCAGCATCCGACCGAAACGCTTGCTAGTGTACATCAATCCCTACAGTGGGAAACAACGCGGGAAGTGGATTTACGAGCAGAGAGTAGCCCCACTCTTCTCTCGAGCCTCCATCTCCACCGACGTGATCGTTACGGAGAGTGCCAATCATGCCAGGGATCACTTGAAGACGGAGGTAGATCTGAAGCAATGTGACGGggtggtgtgtgtgggaggggacgGGATGTTCAGCGAGGTTGTCCACGGCCTGGTCTCTAGGACCCAGAGTGATTCCAGAGTGGACCAGAACCAACCGAACCAGGACCTGGTTCCATGTGCGCTCCGCATCGGAATCATCCCTGCAgGTTCGACTGACTGTATCTGCTATTCTACCACAGGCACCAACGATCCAGTGACTTCAGCCCTGCACATCATCATGGGTGACTCCCAGCCCATGGATGTGTGTTCTGTCCATCACAACAACACCTTCCTCAGGTACTCCGTCTCGCTGCTCGGATACGGTTTCTACGGCGACGTGCTGACAGACAGCGAGAGGAAGCGCTGGATGGGGCCTTCCAGATACGACTTCTCGGGCCTAAAGACATTCCTGACCCATCAGTATTATGAAGGGACTGTCGCTTTCCTGCCCGCTGAGGACAACCTGGGGAACCCTAGAGACAAGATCAAGTGCATGACTGGGTGCCATATCTGTGAGCTGGGTGCCAACAATGGGCAGCTCCTCTCAGGGGATCATGTCGACAAGATGGCTGAAGAGAACTCTGACAAGGAGACCAGTGGTGATGGTGTATGGCGGGTGATCCGGGGGAAGTTCCTAGCAATCAACGCTGCCAGTATGAGCTGTGCCTGTCCTCGCAGCCCTAGAGGCCTGTCGCCCTATGCCCACCTGGCCGACGGCACCACAGACCTCATCCTGGTACGCAAGGCCTCTCGCCTCGACTTCCTCCGACACCTCATGCGACACACCAACAAGGACGACCAGTTTGACATGTCCTTTGTGGAGGTTCACCGTGTGCGCCGCTTCCGTTTTGTTCCAAAGCAAAGCAACGGGATCTCAGAGGTGGACCTGAGTGAGACCAGTGGGAAGAAGATCTGTAACCAGGTCTGTACGGCCCATCCCAACAACGACACGGGCCATAGCAACTGGAACTGTGATGGGGAGATCTTGCCTCATGCGGATATACAAGTGAGtgttCACTGCCAGCTGATCAGACTATTTGCCCGAGGTGTCGAGAGGAGGACCACGTTTGACACTTACACATGGTCTGTAATAGAGGGATCAAGTCTCTCGTGGCAAGCTTAGGGGGACCAACTGTCCCCAATTGTGCTAGAAAGTCCTGCATTTGGaccctttatccctccatcctgCAACCACACATGCAAGTcctgcattttttattttttctatttataactttcattctttttttttaaagtcagttGGTCACGTATTTCAGACTTCCCATTTATTTGAGGAGAACTGCCATCAGCTTGCGCTTTTGACCAGACATATAGGCTGTCATATGGCGCTTTCCCTTCCCAGTCAAGTATCTTTCCTGATGCATCTCCCCTCCTGAGCTTAAGCGAGTATCTGCCGCAATTACACCAGATTGCAGTACAGGTTTCCAAGAATATGGAGACCCATAATGAGATGAACGAAAAGGAGGAATCTGTTCTATGTACCTCCAATCAAAGTATGTGACTGATGTTCTGTGTGGGCATCCAAAGACAATGCGATGGGGAAGTGGAAATCACCAAGCTAGACTGTCGGTAATGCCTCACTGCTTCTGCGTATCGCTGTGATACAATGTGAGGGCAGAGAAACTCCTGGGCAATCAGAGGTCCCTAAGTGATTTTGCTTTTCCCAGGAAGTTTCGCACCTGTGGCACAGAGCTACAGTTAGTCTATTTTGAAGTTATTTAGTTAAGACTAGTAGCCCCCCTCactagtgtggggggggggggggggggggggggggggggctgctgccAGTGGGTTGTCCTCTGTGTGTAGGGTAATGTCTTTGTGTGAGTGCCATCATAATGAGTTAGCTCCGTTACAATTATACACCAGACCGCCATCAGACAGATGCTGCTTCCTGCAGCCAAAACATCAGCCAactctaggacacacacacacacacacatctatcatCTGCCACTGTGAAACCACACACAGACCTAAACTCTCAACACTGTGGGAGGCTCGGCCTGTTCTTTCGGAAGCCTCTCCACGATCATTACTGGTTGCTGCGAAAGGCCATGATTATATTTCAACTCTGAGCTGTGAGTGAATCAGGTCTATGTGGCTGTCCCTTTCTGATGAACTGGCTGATGTTTCTTTGCTGTACAATGGATATATCTGTGTGGAACCAAACGGTGTCAGCCCCCCGCTGACTCGCTAAGCCAGCTGACGTGGGGGAACGTTTTGACAAACACATGAGTTCTGCTGAAGGTTTTATAATGACCAAATATTTATGTAAACCATTCATCTTGCGGGTCTCAAGATGACACGACACACTGTGTGTAACGAACCTGTGATGTGGATTTGATAAGGTTTGAATATGTATGAATGTTTGGATACAGCTTAATTAAAGTGCTTTTAAACTAA

Function

GO: NA

KEGG:

id description
K04715 CERK; ceramide kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1482946 lncRNA upstream 64755 47347385 ~ 47347685 (+) True G1299769
TU1482914 lncRNA upstream 109816 47301449 ~ 47302624 (+) True G1299737
TU1482882 lncRNA upstream 159478 47251292 ~ 47252962 (+) True G1299709
TU1482858 lncRNA upstream 183386 47228733 ~ 47229054 (+) True G1299688
TU1482856 lncRNA upstream 187420 47224802 ~ 47225020 (+) True G1299686
TU1483018 lncRNA downstream 49735 47492786 ~ 47495801 (+) True G1299840
TU1483074 lncRNA downstream 125483 47568534 ~ 47568819 (+) True G1299893
TU1483537 lncRNA downstream 274634 47717685 ~ 47719159 (+) True srr
TU1483563 lncRNA downstream 294330 47737381 ~ 47737608 (+) True G1300334
TU1483575 lncRNA downstream 315033 47758084 ~ 47758394 (+) True G1300346
XM_021563371.2 mRNA upstream 1096365 46293582 ~ 46316075 (+) False brd1a
XM_021563370.2 mRNA upstream 1096365 46293584 ~ 46316075 (+) False brd1a
XM_021563367.2 mRNA upstream 1143707 46260593 ~ 46268733 (+) False alg12
XM_036944447.1 mRNA upstream 1143707 46260593 ~ 46268733 (+) True alg12
XM_021563365.2 mRNA upstream 1239623 46168371 ~ 46172817 (+) True LOC110490155
XM_021563386.2 mRNA downstream 275867 47718918 ~ 47723038 (+) False srr
XM_021563387.2 mRNA downstream 276494 47719545 ~ 47723038 (+) False srr
XM_021563388.2 mRNA downstream 290468 47733519 ~ 47736943 (+) True alg10
XR_002468673.2 mRNA downstream 556077 47999128 ~ 48001885 (+) True LOC110490177
XM_036944465.1 mRNA downstream 675723 48118774 ~ 48146269 (+) False LOC110490734
TU1481549 other upstream 1096438 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 1152003 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 2760361 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 2831392 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 3086261 44321503 ~ 44326179 (+) True cblb
TU1483075 other downstream 126779 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 503317 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 916777 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 1141656 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 1486995 48930046 ~ 48930588 (+) True G1301458

Expression Profile