RNA id: XM_036944465.1


Basic Information

Item Value
RNA id XM_036944465.1
length 8236
RNA type mRNA
GC content 0.48
exon number 42
gene id LOC110490734
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48118774 ~ 48146269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGCAGTTCAGTGAATTGTCCTGTGGTTCTGTCACACtggctctctctccgtctctcattAAGACTGGTGAGCTAGGCAGCATGGTTCCTCCAGGGTGGACTCTGGTAGCTGTCTTACTTTCTCTTGTCTCAGTTCTAGGCCCTGTTTCAACCTCTGATATCCATGAAAATGTGTGTAAGACCTTTGGCAGTGGAGTCGTCCAGATGTTCAACGGAACCGTATTCTACGTCCACTCCACCTGTCCCTTCACGCTGACACGTTTTACTCACAACCGGGTGGACTGTGACATCACCGTGCGTCGAGGTGAAAACGGCCTGCTGGAATATGTCGAGATCAACGTCAACAAGATCCAGACCCGGATTCTGTACAATGGAACCATCTTCGTCGAGCAGAGaatGGTGTCCCTTCCCTACGACCACACCTATCAACATGTGTTCCAGTACGGTACCAACACCAAGCTGAGGAGCACTGTTCTACCTCTGTCTGTCATCTGGAGCAGTGTGGGCGTGGGCATCGACTCTCTCTGGGTGAAACTGGAGCAGGAGCTAGTCCCTGGAATGACTGGACTCTGTGGACGACCAGATATACCAGATGACCGTCAGCAATTGATTGCAAAGAGTGTTCATTCAGAGGACGGGTGCCAGACCATGGACTCCCTCCGCACTAAGAGCAAGGTCTGTCAGACGTTCCTCTCCAACTACGTTGAATGTCTGCAGGCTAACACAAGCAAATACATAATTCTTTGTCAAGAGAATATTTACGGATATGAAAAAGAGCTTTATGTAGGATGTGCGTTCTACAAAGAAATCGCCCATCGGTGTCAGACCAGCTATGCTTGGAGGACCTTGACACACTGTCCTGAGTTCAGTTGCCCAGGAGAACTACACTTTGAGGAGCAGGGTGATGCGTTTGTTCCCACCTGTTCCAACCCAGCACCTAGAACCAATGATCAGGACATCACCAGCACCTGTGTCTGCCCCCAAGGACAGGTCTTGAACGATCGAGCAGAGGGCCATTACTGTGTAAGTGAGTCAGCCTGCCCGTGTGTGTACGCCGGGAGGAACTATGCACCGAAGGAAGAACGCAGAACTAAATGCCAGACCTGTATGTGCTACAATGGCAAGTGGATATGCTCTCAGAACAGCTGCCCTAGTAGGTGTGTGATTGAAGGGCAGTTTGTGACCACGTTCGATGGGAAACAGTATACCCTTCCCGGTAAATGCTCATACATGGCCTCGAAGGGTTTTAATTGGACGATTACCATACATTTTTCTGAGACGACGTCCTCCATCCAAAACGTGTTTCTTCAGATTTACCAGAATACCTACAGATTCTCTCACAACAGTGTGCAGTTTGAGAAAGAGGAAATCCGAGAGCTACATCAGTCAGACAACGCCATGGTGTTCTGGCAGTCATCCATGTATGTCCAGGTATTGACATCCTTTGGCATGAAGATCCAAGTCCAGACGTCTCCAGACCTCCAGCTCTATATCACACTACCACAGAGTGAAGTAGGGATGCCAGAAGGACTTTGTGGAAACTACAATACCGATACCACTGATGATTTCACCACAAGCAGTGGTATCGTAGAAAATGCAGCGGAACCGTTTGCGCTGTCCTGGAGTGTAGGGGACTGTCCTGTTAACATACCTAAAGTCTGTATCAACACCGACAACGAAATATTTGCAGACGAGAAGTGTCACACCTTGAGAGACTCCAGTGGGATTTTCGCCAAGTGCTACGATCACGTGCCTACTGACAATTACCACAAGGCTTGTATCCAGAGAACGTGTACCTGTGGAACTGGGCTgcagcagtgtttgtgtgtggccTTGGCAAATTATGCCAAAGCCTGTGCCAACCAGGGCATCACAGTGGGTGACTGGAGAAGGGCCACTAACTGCACGGTACCGTGTGAGAACAATCAGAGGTTTGACTACGAAATGCAGGCGTGCAACAGCACCTGTCTCTCCCTATCCCGGCCAGACCCCAGGTGTGGGGTGGAGGATGCACCTGTGGAGGGCTGTGGCTGCCTGGAGGGCACTCATCTGACCGGGGGGCTCACCTGTACCCCGAAGGCCCAGTGTCCATGTCACCATCAGAGAGGAGTCACACCACCAGGACCTGTTGCCATCGATGGACGACAGTGCAAATGTGAGGATGGAGAATTGCTGTGCTCTGAAGATTgtgGTTGCACCCAGGGGAAGGTCTGTGTGCATTGCTCACAATTTGCCATAGACACAGCTCAAAAAACATGTGCCAGTCTGAGCAAACCAATAAGTGCTGTTCAGAATTGTACAAGTGGCTGTTACTGTCCAGGGGGCCAGTTGGAAGACcataggggtgtgtgtgtcactgtggaCAACTGCACCTGTCAGTACAGCGGCAAAGTGTTCAAAGCAGGACAGAGTGTCAAGACCAACTGTAGAACATGCACCTGCCGTCATGCCCAGTGGAGCTGTGTAGATGAACCATGCCCTGGTACATGCCTGGTGTATGGAAACGGACACTATCAAACCTTTGACTCTAAATGGTACCGCTACGATGGGAACTGTCAGTACACATTAGTGGAGGATGGCTGTGGTAGGGAAGCTGGGTCGTTTTCTGTCAAAGTGGAGAGTGTCCCGTGCTGTGACGAGGCTCTGACCTGTTCCCGGACCATCGTGTTAGACCTGCTGGGTAATGTCACTCTGACTCTGAATGAAATGAAGGTGACGAGACGGCTCCAAGGGGGATGGGCTTCTCTGGAGGCGGAGCCTCTGTACTCCACCCACACTGTGGGCCTCTACATCATGATCTCAGTGCCTTCTAGAGGACTAACCCTCATCTGGGACAAACACACCCGACTTACCGTCATACTGGACGACCGTTGGAGGAACCGAGTGTGTGGACTTTGCGGGAACTTCGATTCCAACGAGATGAACGACCTGCAGATAAGTGGGTCATCGGTGGTGTCCAGCCCCCTCGCCTTCGGCAACAGCTGGAAGATGGCCACACCCCCCTGCTCTGACGTGATCAATGAGGTGTTTCCGTGCCAGCGCCACTCTTACTGCTCCGCCTGGGCCGAGAGACGCTGTATGATCCTCACAGGAGACACCTTTAAGGACTGCCACTTGAAGGTGGACCCAGAGCCCTACTACCAGGCCtgtgtgttggagtcgtgctccTGTGAGTTTGAGGGGAAGTTCTTGGGTTTCTGTACGTCCGTGGCGGCCTACGCTGAGGCCTGCAGTGACCAGGACGTGTGTGTCCGCTGGAGAACGCCAGACATGTGCCCGGTATACTGCGACTACTACAATGAGCAGGGCCACAGTAGCTGGCACTACGATCCCTGTGGACAGATCAAGACCTGTGGCAAAAACAACCTATTCACTGGCAAGCTGGAAGGCTGCTACCCGAGATGCCCAGCAGAGGCTCCATACTATGATGAGAACACAAGGAGTTGCTCCACTTTGGACAACTGCACCTGTTATTCCAACGAGACTACTGTTGAACCTGGTACAGTTATCAGGAAACCCACTGAGAAATGCACTTGTGAACAGGGACGTATTAACTGTGGTCCTGATCAAACCACCACATCTGAACCTACAACCACAGCTACACAATCAACTACACGGAGAACTCCACCTGAACCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCCACTACTACACCTACAACCACACCTACACAACCTACTACTACATCTGGACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACCTTACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaacccactactacataTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACCTTACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaacccactactacataTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAAGCTACAACAACTATACTGACTACTACACCTGAACctacaaccacacctaaacaaCCTACTACTACATCTGAACCTACAACCACAGCTACACAATCAACTACAATGAGAACTACACCTGAACCAACAACAACTATACTGACTACTACACCTGAATATACAACCACACCTACACAACCGACTACAACAAGAACTACACCTGTACTTACGTCAACTATATTGACTATTACACCTGCATCTACAACCGCACCTACACAACCCACTGTACTACTGATTACAACACCTGAATATACAACCACACTTCAACAACCCACTACAACACCTGAACCTACAACCTCACCTAAACAACCCACAACAACAAGAACCACACCTGAATATACAACCACACTATTCCCATCGATAGTCACAGGACCTACAAATATTCAACATAGTACAGGAGCTGTGGTTGTGTTGAGTACTACAGCCGGACAAACCGCTACTGCAGAAGCAACTACAGCATACATTGACACTACAACTAAATTAGCATCTACACAACCCACAACTACATTCTCATATTCTACAACCAAATATGTTGAACCAACATCTACAACCGAACCAACTCCTTCACATACTGAAATGACAACCGAACCAACTCCTTCACATACTGAAATGACAACCGAACCAACTTCTTCACATACTGAAATGACAACCAAACCAACTCATTTTACTGAAATGACAACCAAACCAACATCTGAAGGACCATCGACTGAAGCTACAACCCTGTACACAAGTCAACCAACAACCTCCTCTACACGATCTCCCACTACCTCTGAATCGACAACATCTACGGGTCCAACAACAATGTCAACAACCATATCTACAAAGTCTACAACACGTACAATTTGTGAGTGTAGAGACCTGAAGAGGAACAAGATATGGGTGTGTGGAGAGAAGTGGACAGAAGAATGCTTCAATAAGATTTGTAAGGGTGGGAAGATAGAGATGACTTCGGTCACCTGTCCGAATCCAGTTCGCCCCACCACGTGCCCCAGGGGACAGATGGTCAGTGTCTCAGACGGATGCTGTAACTACTGGAAGTGTAATTGTCGTTGTAACCTCTATGGAGACCCTCACTACATCTCCTTCCAGGGTGTGACCTTTGACTTCCTGGATAATTGTACATACATCCTGGTCGAGGAGAAAACGCTGCGTCACCATCTGACTGTTGCCGTGGACAACTACTTCTGTATTCCCGAGTTGGACGGCTCCTGTGCCAAAGGCATCATCCTGCAGTACCGGAACAACACGGCCACTGTCAGCATCGTACCGGATGAGTACAGGGTGAAGTCTACTCTGAACCAGAAGAACGTTGAGCCTCCCTATGAGGAGAATGGTATCAGGTTTGAGACGACAGACTATATGGTGTCTGTATACATCCCTGAGATACGCTCACACATCTCTCTCACACCATCCAACACTGTGACTGTCACCTTGGCCATGGAGCATTTCCTGAATAACACCCAAGGACAATGCGGTGTGTGCGGTGGGAGCTCTTGTGTGCGTAGAAGTGGGGAGACTGAAGCTGACAGATGCTGTGATAAGACCGCCTATGACTGGGTCTATGAGGACCCTCTGAAGCCTGAGTGTAGCGCTGCTCCCAGGGACATCCCTTGCCATCCTTCAAACAATACTACCAGCTGTCCTGGCAGCCCCCTCTGTGACCTTCTCCATCACCCAGTTTTTGCAGATTGCAGAAGGCGGGTGAATCTGAGCCAGCTTGAGAAGAACTGTAGGTTTGATTCGTGTGGTAGGAACGACATGGCTTGTTCTCCTCTGGAGCAGGCTGCTGAGGAGTGTAAGAAAGCAGGCCTCTGTGTGGACTGGAGACAACTCACCAACGGGACCTGTGCCATTAGGTGCCCAACAGGGATGGCGTACAGAGAGTGCCAAGGTCAATTGGATGACTACTGTCACGGAGGAGTCCGTGTTCAAGGGAGAGTACAGGAGGAAGTTAAGGCTGGATGTTTCTGTCTCAGAGGACAGTTCAGAGCTGAGGAGCACAAGAAGATCTGTGTGTCGGAGTGTCCCTACTGCAAGGGTCCACTGGGAGAACACAAGCAGCTTGGGGAGACATGGCAGTCCAACTGCCAGGTGTGTACGTGTAGCAACCAAACCAAGACCGAGGAGTGTCAACctaacccctcccctcccaccccaccTCTCTGCAGTCAGAACTCAGTCCTGGTTACCGGCTGCTGTGGCAAACAGACTTGTGTTGAGAAGACGTGTAACTATAATGGAAGGACCTACAAAGTGGGAGACAGATGGTCAGACCTTGCCCTGCCTTGTGAGTCCTATAGCTGTACCAAAGAAGGCATTCAGACAGTGAGAAGGGTGTGTCCCCATCAGAACTGCTCAGAGGAGGACAGAGTATGGGACGAACAACATTGCTGCTACACATGTAACCAGACCTGTGCTACCAGGGTTTCTAGTGTGAACATCACTGTAGACAACTGCACAGCAACACTACAGCTGCCCATGTGTCAAGGCCAGTGTGGGACAGAGACAAGATGGATTGTTGCTCGCAGTCTTCTCCAACTGGAACAGAAGTGCGAGTGTTGCAGAGTGAGGAGTTATGAGAGGAAGTCAATGAATCTGACCTGTACTGGGGGCTCCGTTATGCCACACCTGTATGCACATGTTACCAGCTGCGAGTGCCAGAAGTGCAGTATATTGCAGTAAACATTGCCTTGTGTTCTGAAAGTATATGCATGCACGCAAaccaaaaaaaaatctatattgaACTGTTATTAAGATGGTGAAAATGTGCCAAATCAATGGTTTTTCTAGATTCTGCAACCTTCTTATAATACTGTCTTGGTCGGTGTGTTGGGGGTATACTGTACGGTACGTGCAGAACAACGACTTAATGTTTCCTTGGTGTAATAGGTTTTTCTAAATTGCACATGCTCTGTTCCAGTGCAGGAAGTGGACCATTGTGTGTAGCATATTGTTGATTGCGTATGTATTCCATAGATTTCACATAGGAAATCTTCTACTGATCAACCCAGCACTTTTAGCACTTTTTCAGCTAAATGACTGCAGCTCCAATTTGAAAGTgattttcttattttatttgaAACGTTTATTTCAAGAACTGTAACCACTTTGATTTTGCTGATTTATTTTCAATAAAGTACTGAAGCCTCTACATTGAACCACTGTTTACGTATCACAATCAGTTGACCTTCGCTGATGAATTTGCATGAATTGAATTAACATGAGTATTGATTGAGATTCATCTGATACATTAACATCAGCATTGATTAGCTGAATTCAAAGAAAGTTGCTAATCCTATCAGAGATATATAGGTGCACTATTACCTACCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1483947 lncRNA upstream 8436 48110087 ~ 48110338 (+) True G1300695
TU1483881 lncRNA upstream 121686 47996712 ~ 47997088 (+) True G1300629
TU1483866 lncRNA upstream 139487 47975647 ~ 47979287 (+) True G1300615
TU1483830 lncRNA upstream 183978 47933386 ~ 47934796 (+) True G1300585
TU1483828 lncRNA upstream 186097 47932427 ~ 47932677 (+) True G1300583
TU1483967 lncRNA downstream 35205 48181474 ~ 48202642 (+) False G1300711
TU1483973 lncRNA downstream 36736 48183005 ~ 48225469 (+) True G1300714
TU1484009 lncRNA downstream 43730 48189999 ~ 48216406 (+) True G1300736
TU1484007 lncRNA downstream 44207 48190476 ~ 48220807 (+) True G1300734
TU1483968 lncRNA downstream 47493 48193762 ~ 48212419 (+) True G1300711
XR_002468673.2 mRNA upstream 116889 47999128 ~ 48001885 (+) True LOC110490177
XM_021563388.2 mRNA upstream 381831 47733519 ~ 47736943 (+) True alg10
XM_021563386.2 mRNA upstream 395736 47718918 ~ 47723038 (+) False srr
XM_021563387.2 mRNA upstream 395736 47719545 ~ 47723038 (+) False srr
XM_036944453.1 mRNA upstream 675723 47412437 ~ 47443051 (+) False cerk
XM_021563406.2 mRNA downstream 803 48147072 ~ 48161884 (+) True slco1d1
XR_005036099.1 mRNA downstream 29175 48175444 ~ 48179144 (+) True LOC118938805
XM_021564282.2 mRNA downstream 118212 48264481 ~ 48267175 (+) True LOC110490846
XM_021563417.2 mRNA downstream 154333 48300602 ~ 48308741 (+) True pyroxd1
XM_021563418.2 mRNA downstream 182528 48328797 ~ 48332219 (+) False LOC110490186
TU1483849 other upstream 170882 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 548111 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 1802772 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 1858337 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 3466695 44649701 ~ 44652079 (+) True G1296185
TU1484302 other downstream 213559 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 438438 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 783777 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 1248954 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 1252189 49398458 ~ 49410313 (+) True LOC110490228

Expression Profile