RNA id: XM_021563418.2


Basic Information

Item Value
RNA id XM_021563418.2
length 1739
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110490186
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48328797 ~ 48332219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACAACCTGAAAACATTTTCCATCCGTAAAATGGACGTGTATGTAGGCAGGGAATATATTTTCCAGCAACTAACTAGTTATATTCAGCAGATAAGTGCTCtccttatttttttaattaacgTTTTTATACAACCCTTTAGAATGTTGAATGCAACCCTGAATTTGTCCGGAAGAATGATCtttttgatgaaaccaagaaggCGTGTTTCCGGAAGACGTGGCTAGTGCTACAGTGGCAGCACCTGAACTTGTATTTTAGTAAACTACAATTGACAGTGTCAACTTTTATATTTTACAAGCTGTTGATTCATTGTCAAAATGATCTCTTTAACGGACTCACAGAAGATCGGAATGGGACTAACGGGCTTCGGCGTGTTTTTCCTCTTCTTTGGAATGATACTGTTTTTTGACAAAGCCCTCCTTGCCATAGGAAATATCCTGTTTGTGGCTGGCCTGTCATTTGTGATCGGTTTGGAGAGGACGTTCCGGTTCTTCTTCCAAAAACACAAGATGAAGGCAACTAGCTTCTTCCTGGGTGGAGTGTTGATCGTTCTTATTGGCTGGCCAATTGTGGGAGTGGTCCTAGAGGTCTATGGATTTTTCCTTTTATTCAGGGGTTTCTTCCCAGCGGCAGTAGGCTTCATCAGAAGGATACCCTTCCTGGGCTCCCTGCTAAACCTCCCATTCATCAGTGGGttcgTGGACAAAGTGGGAGAGAGCAACACCATGGTATAACAGTGACTTTTTGTTTATGGAGAAAAACAATCTATTATATTTATGATACAGTTGTTCTCATCAAGCCACGTAACCCCCATTGGTCAATTGCTTACCTCCAACAGTTAGCTAGGTAACTTTCATGAGACTTTGTAAATTGATACCTCTTCCCATGTAAAGGGAAAACAATCCACTTTTTTTGTATCTTGATTCTGCAATTTTAAGGTCCGTACCAGCCAAGGGTACCAGTCCTGGTTGCTACGGGCAACTGTTACTAATGAATCTGGAGTTGGTTAAGATGGCTACCCCAGAATTGTTACGTGTTATTGAATGCTGCTCTCCTCTACTGGAGTACTCCCCACAAGGAGGAGAGTCCCTCTACCGGACTGAAGAGAACCCGTGTCCATTTTGGCACTCACACTCTACTATTGAATGTACAGACAAACTCACCATGTCATCGCCTCTGGACAACCTCAAGAGGTGTGGCGGAGGAGAGCTGGTCCTATTGTTACACTGTAGATGGGCCAGGGGGTTTTCCTAGTgctgtgctgtcttgccaaaaaATGAACTAGGGGTTAGCGagatggcacaaacagatcttAGACCATGTTAGGGTTTCCTGACCATATGACCAGACCAGGGAAAACTCGAAGCCGTAGTTGAAGGTGGTTTCCTGGTCAGGTATTGGAAAGACTCCTGGTCCTACTTATGGTGCCTGTGCTTTCTCACACTGGACTGAAACTTGAGTCCTGGGGAAGAAAATAGCTTTACTTTCCTTTTCTCTCACGCCCGTTATGATTACCGGATCTGGCAGTTGCATATTTCCCCCTTATTTTTCTGCCGTTTCTGTGTATGACTGGTTGAGGAAGCTCTGTAGATACATTTTGTATTTTAAATTTCAAGAGCAACATTTGAGTTGGAATTTTATCAATGTTAACTATAGTAATGGAGGGTACTGAATGGGATATGACAATGGTTTTACAAAGTTTTGTCTGACACTTTAATAAAGAAAACGTGCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1484264 lncRNA upstream 55308 48273194 ~ 48273489 (+) True G1300931
TU1484255 lncRNA upstream 58626 48269946 ~ 48270171 (+) True G1300923
TU1484034 lncRNA upstream 72351 48227136 ~ 48256446 (+) True G1300752
TU1484292 lncRNA downstream 12600 48344819 ~ 48349516 (+) False G1300957
TU1484293 lncRNA downstream 16581 48348800 ~ 48349516 (+) True G1300957
TU1484303 lncRNA downstream 28496 48360715 ~ 48360941 (+) True G1300967
TU1484288 lncRNA downstream 30518 48362737 ~ 48367701 (+) True G1300953
TU1484308 lncRNA downstream 46340 48378559 ~ 48378910 (+) True G1300972
XM_021563417.2 mRNA upstream 20056 48300602 ~ 48308741 (+) True pyroxd1
XM_021564282.2 mRNA upstream 61622 48264481 ~ 48267175 (+) True LOC110490846
XR_005036099.1 mRNA upstream 149653 48175444 ~ 48179144 (+) True LOC118938805
XM_021563406.2 mRNA upstream 166913 48147072 ~ 48161884 (+) True slco1d1
XM_036944465.1 mRNA upstream 182528 48118774 ~ 48146269 (+) False LOC110490734
XM_021563423.2 mRNA downstream 3912 48336131 ~ 48337866 (+) False LOC110490188
XM_021563422.2 mRNA downstream 4460 48336679 ~ 48337866 (+) True LOC110490188
NM_001281386.1 mRNA downstream 27580 48359799 ~ 48360553 (+) False kiss2
XM_036944471.1 mRNA downstream 101539 48433758 ~ 48441874 (+) True LOC110490738
XM_021563435.2 mRNA downstream 137802 48470021 ~ 48479144 (+) False LOC110490194
TU1483849 other upstream 380905 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 758134 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 2012795 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 2068360 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 3676718 44649701 ~ 44652079 (+) True G1296185
TU1484302 other downstream 27609 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 252488 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 597827 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 1063004 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 1066239 49398458 ~ 49410313 (+) True LOC110490228

Expression Profile