RNA id: XM_021563436.2


Basic Information

Item Value
RNA id XM_021563436.2
length 2366
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110490194
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48470021 ~ 48479877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAATGTGCCTTTTTGCTGAAGTGGACCAATCAAAGCTCGTAAAGGCTCAAATTTGTAATCTCATTGGATCTCCTTTAAGAAGGAAGGAGGCCGATGCTAGGGTGTGTTTATTAAACTGTTGACTTGTGAAacagatatagtgtagatattgTGTCTGGAATCAtcaggcagGATGGAGATCAGGCCGTTGCTCATGTGCTTTGCCCTCTGCGTGGTCTATGCCACCAGTAAACCCACAGAGAAAAAGGAACGCGTTCACCACGATGCACCTCTCAGCAGCCGCGAGCACGACGATGCTCAGGGCTTCGACTACGACCACGATGCCTTCCTGGGACAAAAGGAGGCCAAATCTTTTGACGAGCTCAGCCCAGAGGAGAGCAAGCGCAGGCTAGGTGTGATTGTAGTGAAGATTGATGGGGACAGTGATGGTTTTGTCACTGAGGTGGAGCTGAAAGCGTGGATTAAGAAGGCTCAGAAGAAGTACATCTATGAGAACGTGGACCGCCAATGGAAGGACTTTGATGTCAACAATGACGGCATGATCTCCTGGGAGGAATACAGGAACGTAACTTATGATGACCCGGAACCAGATGATGGCTACAACTACCAGCACATGATGGCGAGGGACGAGAGGCGTTTCAAAATGGCCGACCAGAACGGAGACCAGATCGCCAACAAAGAGGAGTTCACCGCCTTCCTACACCCAGAGGAGTACGACCACATGAAGGACATAGTGGTGCTGGAAACCATGGAGGACATTGATAAGAATGGGGATGGTTTCATTGACCTGAATGAATACATAGGTGACATGTACAACCATGAAGATGAGATGGAGGAGCCAGACTGGGTTGCGACAGAGCGCGAGCAATTCTCAGAGTTCCGGGACAAGAACAAAGACGGGAAGATGGATCGGGAGGAGACTATGGACTGGATCCTTCCTTCAGACTACGACCACGCAGAGGCCGAGGCCAAACACCTCGTCTACGAGTCTGACTCAAACAAAGATGGaaagctcagcaaggaagagatCCTGAACAAGTACGACCTGTTTGTAGGAAGTCAAGCAACTGACTTTGGCGAGGCGCTGGTACGGCACGATGAGTTTTAGATGATTTAGTCCTAGCTAGATAAAACAGTTTTATACTTGGTTTGATTTATATTTTGTACGAAACCTAttcatacagtacattgtctccaATTCGTTTGTGGTTGCTAGCACCTAATAGTTACGTGTGTTTATATATACTGACTTCCCATCCCAACACTTAATTTTATTGTTCTGTTACGTACATAGGTAGTTTAGATTGGTCATTATTTTTGCCTTGGTTTGAAACACAATGGTATACTCACAAGCACTGAATACTCCTTTTGGAGTTGTAATCATTTATAATTCTTCCACCAAACCCTTCATGTGTGGGAATGATTTGGTGTTTTTTACAGTCATGTTTTGAATGACACTGATTGTAGTGATAGCCCATCATTTCTTAGTATAGTTAGTAGATGAGAGATGCTACCCAACATTAGCCTCCTACATTTCCTTTAACCCAGTGTGTGCCTTCTCTGAGTAGTCTTTTGGGAGCTCAACCAATGAAACTGACACTAAATATCAGTGAATCAGGGGGTCATGGGAACGTGAGTCCACTACAGTGAAATCATCCCTCACCCTGCTCTGTTTCTCCATAAACACTTTCTTTGACCCCCTTTTCttcatatgtactgtatttgtCTATCATGACTAGGGCCGTTATTACATGACTAGGGCCGTTATTATTAGCAGTTCATCACTGCTTCTGTAGCCTTCTCCGCTGTCAATCACTGCCTCTCAGCAGTCTacagtggcttcctctccttgcCTCCATCTGCATTGGTCTAGAAACAAATGATAGGTGAAAGAAGTATGTTAGATGACCAATGTGAAACAAGAAAAGGAAACCGTTTTGGACTATTGAGTAGCAGCACAAGTGTGAGAGCGCGTCTGTTGTTCTATTGGTTAGAAATAAGAGCGGTTGTACTTCCTTCCTGTGGGGCGTGCTGAACTGAAAGGTTGGTGCATTGCAGCGTCGTTGCTGAATTACGCTTGCTTAAAATTCAATTAAGATTATGTTGAAGTATTTACATAGTCAGCAAGTGTTTATTTTCTGAATTTATGCACAGTGTATGGACATTCATATTTTTTGGATTGAATGCTGTACTTTTGATTCCACAGTCCAtttctcaataaaaaaaaaactaattgaGTAAACTTATTTGTTCAAGTTTGAGCCTCAAGGCACAACTTCTTTTTAAGAGTTTGTTTGTCtggttgtgtttgtgttaatGGTTTTTGTTAAGACATCCAATAAATGGTGATCGTGGTTGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1484353 lncRNA upstream 3298 48466509 ~ 48466723 (+) True G1301014
TU1484329 lncRNA upstream 70525 48398422 ~ 48399496 (+) True G1300990
TU1484322 lncRNA upstream 84441 48385296 ~ 48385580 (+) True G1300983
TU1484320 lncRNA upstream 85973 48383752 ~ 48384048 (+) True G1300981
TU1484318 lncRNA upstream 87419 48382356 ~ 48382602 (+) True G1300979
TU1484494 lncRNA downstream 8547 48488424 ~ 48488624 (+) True G1301140
TU1484498 lncRNA downstream 11212 48491089 ~ 48491290 (+) True G1301144
TU1484516 lncRNA downstream 39478 48519355 ~ 48519624 (+) True G1301162
TU1484518 lncRNA downstream 41466 48521343 ~ 48521564 (+) True G1301164
TU1484521 lncRNA downstream 44127 48524004 ~ 48524217 (+) True G1301167
XM_036944471.1 mRNA upstream 28147 48433758 ~ 48441874 (+) True LOC110490738
NM_001281386.1 mRNA upstream 109468 48359799 ~ 48360553 (+) False kiss2
XM_021563423.2 mRNA upstream 132155 48336131 ~ 48337866 (+) False LOC110490188
XM_021563422.2 mRNA upstream 132155 48336679 ~ 48337866 (+) True LOC110490188
XR_002468675.2 mRNA upstream 137802 48328797 ~ 48332219 (+) True LOC110490186
XM_021563441.2 mRNA downstream 12698 48492575 ~ 48509537 (+) False LOC110490196
XM_021563442.2 mRNA downstream 12698 48492575 ~ 48509832 (+) True LOC110490196
XM_021563465.2 mRNA downstream 270273 48750150 ~ 48752766 (+) True lamtor4
XM_021563456.2 mRNA downstream 277328 48757205 ~ 48767893 (+) False LOC110490204
XM_036944482.1 mRNA downstream 278085 48757962 ~ 48767893 (+) False LOC110490204
TU1484302 other upstream 109582 48359828 ~ 48360439 (+) True kiss2
TU1483849 other upstream 522129 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 899358 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 2154019 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 2209584 46254339 ~ 46260437 (+) False G1298452
TU1484559 other downstream 104830 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 450169 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 915346 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 918581 49398458 ~ 49410313 (+) True LOC110490228
TU1486531 other downstream 1698397 50178274 ~ 50178565 (+) True G1303015

Expression Profile