RNA id: XM_036944482.1


Basic Information

Item Value
RNA id XM_036944482.1
length 4295
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110490204
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48757205 ~ 48767893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgcatgtcagagcagaaactataccacgaagtccaaggaactgtatGTAGATCTCAGAGATAGAATTGTCATGAgacatatatctggggaagggtatagaaccatttctagagtgttgaaagtttccaagagcacagggATCTCCATCATTGGGGAAATGGACAAGAATATGGGAACAACCCAgactgcctagagctggccgtgcAACAAAACTGAGCAACCGGGGTTTTTGTTTGAGCCAGTAATCATGGATCCCAGTTGGAAGTCAAGCAACTGAAAATAAAACCAAAAACCCACTGAGCCATGGAGAAGTTTGGGATGAGCTTTGGGGGTGGCCCCAGCAAGAAGGAGCTTGTGGACACCATAGAGACTCAGAGAAAGCAGATGGTCCAGTATCAAACACGCTTCAAGGATGTGGTCAGGGCCTACAAGAGCCTGCTGAAGGAGAAGGAGGCTCTGGAAGCTAGTCTGAAGGTACTGACTGTCTCCCAGGAGGTCGACCTCAGCCAGCGTGGAGATGACGGCTCTGCCAGTGGCAGCCATTTGACCTCTGAATTACAAGATGATCACTGCTCCATGCACAGCGAGGACAGTCTGGACACAGCAGCCTCCGCCGACACTGCTACCAGCATTACCAGTGGGAGCACCAAGGGCGACCAGGCTGAAGAGGTGCAGGGTAGTAGCCCAGGAGAGATGGGGGCGACCGGGCCTGGAGGCCCCTCAGTGTCCCAGAGGTCTGAGGAGGCTAATGGGTCAGAGAGTGGTATCAGCTCCAGCAGTAGTGGAGGGTCTGAGGTTCAGCAGCACCTTACACCCCCACCCACCTTGTCTATGGAGGTTGACCGGAGGGTTCTTCAGCTGAAGACCCAGCTGACCACCCTGACCAGCTCCCTGGCCACGGTCACGCAGGAAAAGTCCAGGATGGAGGCCAACTTCCAGGCTGACAAGCGGAAGATCAAGCAGGACATGGATGAGCTCCAGGGGAGGCTGGAGGAGTCCAGGAGGCAACATGAAGCCGAGATCCATGCCTTGCATGAGCAGCTGGCGGAGAGCAAGGCTCGGGTTATAACCCAGCAACATGAGAGAGAGCAGGAGCAGGGTGACCACGCCCACATGCTCAGAGAGCTCCAGAAATTGCtgcaggaggagagaggccagAGGCAGGATGCCGAGCTTCGGCTGGAGGACGCCAGGGTGGTCCTGCTGGAAGTCACACAGGCCGCAGATCGGGGGCACGATTATGAGGCCCGGCTAAAAGAGGTGAcccagcagagggaggagatgaggaggagccTGCAGACTGCGGAGGCGGAGAGGAACAAGCCAGACCCCCGGGTGGAGGAGCTGCAGAGGGAGCTGACGGCACTCAAGAACCACTTTCAGCAGCAGATGCAGCATGAGATCAGAAAGGTGTCGCAGGCAGAGGAGCGTCTACAGGAGCAATCCCAGCTGGAGGAGGGCCGTGTGGCCAGCCTGGAGTTGCGGGTGTCTGAGGTGTCTGAGCTGCTTGGGGCCTGCGAGAAGGCCCGGCAGAGGGACCAGCAGAATGCCCACCGGCTGAGAGAGCGCATCCTGCAGCTGGACACGGAGAACAAGACCCTGGCCATTGCCGCTTCCACCCGGGGCTCCCCGCTGGACCTCAGCATGGACGAGGCCAGCCTGGATGTGAATGTGCTGAAGGAGCGCATGGAGAAGGTGAAGAGGCTTCTTCTGCTAGCCACACAGAAGAGCCATCCAGAGCAGACCATTGAGATAGAGAAGCTGGATGAGATGGAGGGGCGGCTGGGTCAGGGGACGGGCAGCGGGGGGGAGTCGTCAGACGGGGAGAAGGCCTCTGCGCTGTACTACCAGCAGGAACTGCGGCAGCTGAAGGAGGAGTTTGAGCGCTACAAGGTGCGGGCGCAGGTGGTGCTGAAGAACAAGAACGCTAAAGACTGTAGCCTGGCCAAAGAGCTGGAGGAGGCCCGTGACCAGCTGGCTGAGCTCAAGGAGAAGTACATCAACCTGCGTATCCATGACGACAAGGCGGAGGCCAAGCACTGCCGGGAGCTGGAGGAGTGTCAGCAGGGGATAGGGATGCTGCAGCAGGGTCATAAACAGGAGCTTGACCAGGCTGAGGCCCAATACAGAGAGAGCCTCCTCAGGCTGGAGGGAGAACTGCACCGGCAGAGGGACCGCACTATGGCCCTGCTGCAAGAGAAGGACCAGGAGCTGGAGAAGCTAAAGTCTATCGGCTACAGTCTTGCTGGTTACAGAGGCCACCACAGCGACGAAGGAGACACAGGGGCGGACTTCAGAGCGACTGCGGACGTCGGCAGGAGTAAAAACGCCAACAACATAGACGACCCGGCGCAGGAGGAGAGTGACATCATCACCCAGGCGTTGCGGCTGGCGGGGCCCAACGAGCCCACGCTCCTCCTGTACGCCGAGCAGCTGGCGAGAAAGGAGGTGGAGATCGGCTCACTGCGGCGGCAGAAGCACCGGCTGGAGGAGGACGTGCACCAGCTGCAGGGGAGGCTGATCGCCAACGGGGAGCGTTACGACGAGGAGGTGGCTGAGCTCCGCGGCCAGCTAGACAAACGGCACAGGGACCAGGGCAGGGAGGGGGCCAACCTGGAGTACCTCAAGAACGTAATCTACAAGTTCCTCACCCTTCAGGACACTAGGGGGCGTCAGCAGACCCTCACAGCCATACTGACCATCCTGCACTTCAGCCCTCAGGAGAAGCAGGCGGTGGTCAAACAGCACCAGAACCAGGCGTGGTGGACGGCAGGGATGAGGCGATGAGTTCAGCTCCTCACTCTGCAAATAATGAGAACTCACTTGAAACATTCCTCGGATAGTCAACAAGTGTGTGTTTAGTTTTCCTGAATGAAGTCTATTTATTCTGGTGTGGTGTCAAATGAAATGGCAACCAACATTTGAGCTTTGACGctgttgattacattttattttcctcCAGACTTTATTCAAAAGGATTGCTTTATGTGTGAAAGCACACAACATTGGATTTCGCAATCTAATGAGTGGCTCTAGAAGTGTGGGTTTGTATTTGTCACTATGTGAAGCAGCATGTTTGGTTGTTTTGATTCTTTGATAAGATCGAATCATAGCATGAGGCTCACATCTGTGTTTCCAGAGTTTCTGTCAAAAGGTAACCAAATATTGACTGTTCTTACAGAGGGATAAGGACAGAATCTAACTTATTGACAACCTCAGTCTTTATCACCTGTGTGAGAGTTGTTTTTCTCATTACAACACTGATTATCTCCTGGGTTGTCCATCTCGGTCAAGGGACGTGCGCCACAGGAAGTAGGATCCTATCTAACACAGGTCCCAAAAAAATGTGTCTGAGTTTCCTCATCTGCCTTTGTTCACTAGTGATCTCCTGCTTCTATTTGAATATTTAAACTATACCTCTGCATGTATTGAAAATACATTTTCGATTGATCTTGATGAGAGATTGCGTTTACACCGGCAACCCAATTTTGATATCTTTCTACAAGTATTTTTTTTGACCAGTCAGATCAGATATTTGActaataattgggatgtctgtgTAAGCACAGCCATAATGACGTTAAAGGCAAGATTCCctgttcaagcaggcagaaatacagCCGGGTATGATGAGTTTTGCATCATATTGAAATAaaaccaattagtggaaaaaaatgTGTAAAACTCTACATACCGACTGTATTTCTTTCTGTCTGCTTGAAGGTCGAATTGCTCCGATAAACATGAAATGACTCTGGGAATCGATAGAACGTTGCTCAGAGATGCACAAATATGATAACATCTAAATGGGTAACTTTAAATCTTTCCTTTTTAATATTGAGCTACTATCAGTTTTAAAGGGATTATTCAGGATTTGGGCAATGAAgcccctttatctacttccctgaACTCATGGAATCCATTTTTATGTTTCTGtctgcagtttgaaggaagttgctaactagcgttagcgcaatgacagACTTCCAGTCATcgcgctaacactagttagcattggctcgctgAGCTAACTTCCTAAATTAAGTAATAAAAATGGTATccgttcatctgactctggggaagtaaacaaagggcttcattgccaaaatatcgaagtatccctttaatgctAGATGTGTTGTACATAATTGTatgataaaaaaaacagaatactTTGGTTGGTAATTACAGTATTTTCTAGTATACAGTTGTGGATAATACAATGTTTATTGATGAAATGCATATTTTTGATTCCCTCAACATGAAAATTAAACTTTTTTCTCAGAGATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1484730 lncRNA upstream 26401 48727392 ~ 48731561 (+) False G1301366
TU1484731 lncRNA upstream 26401 48727392 ~ 48731561 (+) True G1301366
TU1484722 lncRNA upstream 48578 48709140 ~ 48709384 (+) True G1301358
TU1484721 lncRNA upstream 49487 48708197 ~ 48708475 (+) True G1301357
TU1484719 lncRNA upstream 50906 48706722 ~ 48707056 (+) True G1301355
TU1484646 lncRNA downstream 87 48767980 ~ 48768236 (+) True G1301285
TU1484816 lncRNA downstream 125645 48893538 ~ 48893741 (+) True G1301434
TU1484821 lncRNA downstream 130795 48898688 ~ 48898972 (+) True G1301439
TU1484828 lncRNA downstream 140625 48908518 ~ 48908726 (+) True G1301446
TU1484832 lncRNA downstream 149103 48916996 ~ 48917271 (+) True G1301450
XM_021563465.2 mRNA upstream 5196 48750150 ~ 48752766 (+) True lamtor4
XM_021563442.2 mRNA upstream 248130 48492575 ~ 48509832 (+) True LOC110490196
XM_021563441.2 mRNA upstream 248425 48492575 ~ 48509537 (+) False LOC110490196
XM_036944475.1 mRNA upstream 278085 48470101 ~ 48479877 (+) False LOC110490194
XM_021563458.2 mRNA downstream 7563 48775456 ~ 48783034 (+) True LOC110490205
XM_021563482.2 mRNA downstream 84686 48852579 ~ 48859532 (+) True LOC110490215
XM_021563483.2 mRNA downstream 187177 48955070 ~ 48957811 (+) True LOC110490216
LOC118938892 mRNA downstream 225284 48993177 ~ 48993971 (+) True LOC118938892
XR_005036106.1 mRNA downstream 243428 49011321 ~ 49015350 (+) True LOC118938811
TU1484559 other upstream 172699 48584707 ~ 48585263 (+) True G1301200
TU1484302 other upstream 397523 48359828 ~ 48360439 (+) True kiss2
TU1483849 other upstream 810070 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 1187299 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 2441960 46314252 ~ 46316002 (+) True brd1a
TU1484840 other downstream 162153 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 627330 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 630565 49398458 ~ 49410313 (+) True LOC110490228
TU1486531 other downstream 1410381 50178274 ~ 50178565 (+) True G1303015
TU1486619 other downstream 1533552 50301445 ~ 50302351 (+) True G1303095

Expression Profile