RNA id: XM_036944535.1


Basic Information

Item Value
RNA id XM_036944535.1
length 2276
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110490235
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50104336 ~ 50144944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATATCCTGTTGGGATCAAACCCGAGGGTAATCTGATGAGTCTCTGTTTGAAGTGATTATCACGCAGGGAAACTAAGGGATAGCCCGGCTTCTCGCCTAATTAGTGAATTTAGTGCAGAGCCTTAAGAAGTTTATAAAGACATTGGctgaggacaggaggggacagtCCTCAACCTCTCAACTCACCAGGACAGCCACCGGATAGCAGCCTCTTAACCACAATCCTACTGGTACTTTGAGCAGCTCTACAGCTAGTACACCAGACCTGAAGACAGTCTCTATCTGACCGATGAGAATGCCACACTTAAGTGACTGTAGTTACTACAAGATGCGAGACGGAGCCCGAGTTTCCAATGTCCAGAGCCACCTGGAGGGCTCTAAGTTCCACCTACACCAGGCCCAGAGTCAGCAGGTCAAGCAGTACCTGACGCTGGGTTCCAAGGTGGCCGGGGGACAGGGGGGCCACCCTCACCCCACTGGGCAGGGAGGGCAGCTCCTGGGCGCCGTTCCAGTGATGAGGAACGGCCACCTGGCCCCCCTCAGCGATGGCAGCACCCCCAGCAGCCCTGTTACACTGCTGACCCTGGCATCAAACCATGACAGTGAGTTTCCAATGGATGCCGTTATTGATGACTTGATTAGCCTGGAGTCCGGGTTCAATGACAGGGGCTTGGATTGTATGGATCCCAGCATCATAATGCAAAACAACgTGCTCAGCAGCAGCATGCTGGACATCTATGGGGGTGAACCAGAACATGAAACGAGAGTGATGGCCAAAGAACGACAGAAGAAAGACAACCACAACTTGAttGAAAGAAGAAGAAggtacaacatcaactacagaatCAAAGAACTTGGAACAATGATACCAAAGTCGAATGACCCTGATATGCGCTGGAACAAAGGCACCATTCTCAAGGCGTCGGTGGAGTACATCAAGTGGCTGCAGAAGGAGCAGCAGCACGCCAGAGAGCTGGAGAACAGGCAGAAGAAGATGGAGCAGGCCAACAGGAGGCTACTGCTCAGGATCCAGGAGTTGGAGATCCAGGCCCGTGCTCATGGCCTCCCCAGCATGGCCACTGCCCTGGGTACTGTAGagctctcctcccacctcctcaaacaacaaaaacaacagcagCAGCCCTTGGCTCCCCAGTCACTGCAGGGTCTCCAGCCACCCGTGTACCAGGAAGAACTGAACGGGGAGTACCTCCAGAGGACCTCCATGCCAGCCATGGTCACCGGGGctacagaccagggtcaggggGTGGTTGATGACTCCACCACTTTCTCCGACCCGCTCTCTCACTTCACAGACTTCTTCAGCTCCACGCTCAAAGAGGAGCAACGGCTAGATGAGATCCTCATGGACAACCCGCTCTCGCCTTTCGGCACCGACCCGCTTCTCTCCGCTGGCTCGCCCGACGCCTCCAAGGACTCCAGTCACAGGAGCAGCTTCAGCTCGGACGATGGCGACGATGACCTATGATCCCTGACCCCTCCGCGACCCCGTGTCAAAGGTCAAGGGACAAACAGCAGTTGGTCACCCTCACAAAGTGGTGCAGGgatttgttccagcccagcaccaacacatccgATTCCACTGACCAGCTCGAATCATTGAGAGCTTGATTCGTGGgctcaggtgtgttagtgctgggccgGAGCCTGCACCCCCTGtggctctccaggaccagggtcagttaccaCTGGCACTTCCACTTTTTGAAAACTTTGATCGAGAGTGCATACAGCACCTCTGCCTCGCAGACAGAACCAGACTCATGAGAAAAAGGGAGAAAGACAATCGGTCCATACTGATCATATAATACTGCTCCACAGTGCATTGAACACTGGGGTTGTTGAACACCACTGTAAACTATGCAGACTACTTCACTGTACCTATCATGTGTCTTTGCGACATGCAAAAAGAGCATTGTTTCCTTTTCAGAGGTATAGTATTACTGTTCTTGTATAAAAGGACTTTAAACCATTGAGATTCACTGATGGGCCCTATCGAGAGCTAGTTACTGGTGGTTCCTCTATCAAAAACAGAAATGAAAATGGAACAGTGATACTAGCCGAAAAAGCCTAACACGTCCTTCGTTCatctttacatttatttttataaaatgtttCATGTATTTATATGTGTTTTAATCCATGTATTCCCaaaaaacatgacattatctaacATGCTCTCTTTTCTATTGGTGGGGGTGTGGAAAATATAATAAACCCCTTTTTTTTCAAATAAATCAGACTTGCCGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486315 lncRNA downstream 122484 49981592 ~ 49981853 (-) True G1302809
TU1486289 lncRNA downstream 139583 49964515 ~ 49964754 (-) True G1302783
TU1486273 lncRNA downstream 154347 49948504 ~ 49949990 (-) True G1302767
TU1486236 lncRNA downstream 192911 49910888 ~ 49911426 (-) True G1302732
TU1486159 lncRNA downstream 319595 49782648 ~ 49784742 (-) True G1302656
TU1486475 lncRNA upstream 8656 50124703 ~ 50124936 (-) True G1302960
TU1486487 lncRNA upstream 28665 50144712 ~ 50144944 (-) True LOC110490235
TU1486491 lncRNA upstream 29692 50145739 ~ 50146580 (-) True G1302976
TU1486496 lncRNA upstream 32166 50148213 ~ 50148477 (-) True G1302981
TU1486697 lncRNA upstream 64304 50180351 ~ 50180576 (-) True G1303168
XM_036944504.1 mRNA downstream 422135 49671334 ~ 49682202 (-) True LOC118938812
XM_036944503.1 mRNA downstream 426059 49671334 ~ 49678278 (-) False LOC118938812
XM_036944502.1 mRNA downstream 426060 49671334 ~ 49678277 (-) False LOC118938812
XM_036945588.1 mRNA downstream 489775 49613936 ~ 49614562 (-) True LOC118938922
XM_036944501.1 mRNA downstream 491706 49609218 ~ 49612631 (-) False LOC110490232
XM_036944536.1 mRNA upstream 54222 50170269 ~ 50175057 (-) True LOC110490237
XM_021563507.2 mRNA upstream 70312 50186359 ~ 50187279 (-) False LOC110490238
XM_021563508.2 mRNA upstream 70312 50186359 ~ 50187308 (-) False LOC110490238
XM_021563506.2 mRNA upstream 70312 50186359 ~ 50187380 (-) False LOC110490238
XR_002468683.2 mRNA upstream 70521 50186568 ~ 50187380 (-) True LOC110490238
TU1486102 other downstream 440041 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 1265186 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 2400299 47652510 ~ 47704038 (-) True celsr1a
TU1483202 other downstream 2884722 47217536 ~ 47219615 (-) False tbc1d22a
TU1486703 other upstream 183417 50299464 ~ 50301007 (-) True LOC110490244
TU1487991 other upstream 1083182 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 1670584 51786631 ~ 51793354 (-) False LOC110490744
TU1488527 other upstream 1670584 51786631 ~ 51787491 (-) False LOC110490744
TU1488519 other upstream 1670650 51786697 ~ 51793354 (-) False LOC110490744

Expression Profile