RNA id: TU1486487


Basic Information

Item Value
RNA id TU1486487
length 233
lncRNA type sense_over
GC content 0.54
exon number 1
gene id LOC110490235
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50104336 ~ 50144944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactgaggagcaggccatttactctgggcacctctgggcacctttcatccaagctactcaatactgcccctgcagccataagacgTTTTAATGACTGTATAGGCCGTTGTCTGTCCTGTTTCTCTTTGACCCAGACAAGACCATCCGTGGAGAGGAGAGCCATGTTCGATTCTCAGACTGACCTGCCTGTGATGCAGCTGGTGAGGGGTCAACTAAGGGGACAGCCTGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486475 lncRNA downstream 19776 50124703 ~ 50124936 (-) True G1302960
TU1486444 lncRNA downstream 38510 50096961 ~ 50106202 (-) True G1302931
TU1486315 lncRNA downstream 162859 49981592 ~ 49981853 (-) True G1302809
TU1486289 lncRNA downstream 179958 49964515 ~ 49964754 (-) True G1302783
TU1486273 lncRNA downstream 194722 49948504 ~ 49949990 (-) True G1302767
TU1486491 lncRNA upstream 795 50145739 ~ 50146580 (-) True G1302976
TU1486496 lncRNA upstream 3269 50148213 ~ 50148477 (-) True G1302981
TU1486697 lncRNA upstream 35407 50180351 ~ 50180576 (-) True G1303168
TU1486782 lncRNA upstream 254557 50399501 ~ 50400084 (-) True G1303246
TU1486849 lncRNA upstream 316991 50461935 ~ 50467994 (-) False LOC110490255
XM_036944531.1 mRNA downstream 23472 50104336 ~ 50121240 (-) False LOC110490235
XM_036944533.1 mRNA downstream 23472 50104336 ~ 50121240 (-) False LOC110490235
XM_036944534.1 mRNA downstream 24525 50104336 ~ 50120187 (-) False LOC110490235
XM_036944530.1 mRNA downstream 28662 50104336 ~ 50116050 (-) False LOC110490235
XM_036944536.1 mRNA upstream 25325 50170269 ~ 50175057 (-) True LOC110490237
XM_021563507.2 mRNA upstream 41415 50186359 ~ 50187279 (-) False LOC110490238
XM_021563508.2 mRNA upstream 41415 50186359 ~ 50187308 (-) False LOC110490238
XM_021563506.2 mRNA upstream 41415 50186359 ~ 50187380 (-) False LOC110490238
XR_002468683.2 mRNA upstream 41624 50186568 ~ 50187380 (-) True LOC110490238
TU1486102 other downstream 480416 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 1305561 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 2440674 47652510 ~ 47704038 (-) True celsr1a
TU1483202 other downstream 2925097 47217536 ~ 47219615 (-) False tbc1d22a
TU1486703 other upstream 154520 50299464 ~ 50301007 (-) True LOC110490244
TU1487991 other upstream 1054285 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 1641687 51786631 ~ 51793354 (-) False LOC110490744
TU1488527 other upstream 1641687 51786631 ~ 51787491 (-) False LOC110490744
TU1488519 other upstream 1641753 51786697 ~ 51793354 (-) False LOC110490744

Expression Profile