RNA id: XM_021563522.2


Basic Information

Item Value
RNA id XM_021563522.2
length 1865
RNA type mRNA
GC content 0.44
exon number 3
gene id cdkn1d
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50321349 ~ 50333454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCCTGAACAAACAGTCCCTATGACATCACCCCACAACCATGTAAGAACTGAAAGAGGAGAAAGGACCTATGAGGAAGGACATCCACTGggACATTAAGATGGcgtcatcatcattattatctgACGGGAACATGCTGGTCTGTCGGAGTGTAGAGGAGCTGAAGCGCAGGGCCCAGGGCCCGGTGAGGAGGAACCTGTTTGGGCCTGTGGACCACGAGCAGCTGCAACAGGATTTCCAGAGGCACCTGGGTATGAGCGTGGAGTCGGCCAACAAGCGCTGGGACTTTGACTTCAACACCGGCAAGCCGGCCGCCAAGGGCGCCAGCGTGGAGTGGGAGGAGATGAAATGCCAGGATGTGCCGGCGTTCTACCGCAACTGTGTGTTGAGGAAGCCGGTGATTGGCATCGACGGGCAGAGGGCGGGGAGAGAGAATGTCAGGTTGGCCCGGGCATCGTCTCCAGGGTTGTCCAGTTGTGGTGAGGAGTACCTGGAGGTGACCACCAGGGAGAGCTATACGATCCAGAAGCCAGAGAAGAAGATGGCCAGCCAGAGGGCAGGAGCAGTCAAACGGAGACAAGCCGCCATAACAGAATTCTTTGTCGTGAAGAAGAGGACGACCATGCATGACAAACTGTCCTCTCTGCAGTAAACACAGCCCAGGAAAGAGTGCAATTCAGTGGGCATGCTCCGTTTGGAACTCACCTCATTAAGATGGATATATAATTTCTGCAGCGTTCTGTAGCGACTCTGACAGTCGAAGAGCTCATAGCTACAATATGTCTTATAGGAAGTGGAAAAGGAAGTGGAAATGATGgatgtttgtatatatatttatatagctgTATTTCATCTATATTTTCTAAGCTTGTATTATTGTCTAAGCTTTAGATTATACTGTGAAATAATTCAAATGCACTCATCAGGAAAAAAACCCCAATGGCTATGTTGTAAGAGATTTCTTCCAACAGTGCCCTTGGTGTAGTATTTAACTCCCAACCACTTCGGCCCACACTCTAACTACCTCTCTAAGAGTAGTTCAACTATTCCTGACCTCACTCCACGTGTCGTCTTCAGTTTCACCACGGCTGTAAAAGTATCAGCCACGCGAGTAAGAGGCCCCGGGGTCACCTCAGGTCAAATTGGCAACGTGACCATGATTAGCCTAGGGTGCAAAGGTCAACTGTGAAGTTCCAGCACTTAGGCTATCAGGCCTAATATGATAATGATACATCTTATTGAGCAGTAGTACTTCTCAGTAAATGTCTATTATTACAGTAATTGTTTTATTCTTAAGCCTTTTGGTGTGAGTATTATTACAGAGTGATATTTGGTGTCAGTAGGAAACGAGCTTAAATTAGCTTAAGTTCATTCTCAAATATTGTTATTATGGCTAGCATACACTTCACTGTTGGCACCACCGTCTCTGTAGAATTTGGCAAAAATCTCAGTGCACAActgaataaaataaattgtttttattttatttagctcCCTTTGTCTTTTTAAGGTAGtaaaacatattcttggaaacTTTTTGGTAACAAAACTGAATATACCTTGTATGTTTCCTTTGTTGGCTAAATCCTTTTAACAACGTTGCCTTTTCTACTCTTGTCTTTGTATAATGGCAGCCTCTAGGTTTTGAACTCTTTCCTATATGAAGGAATGTAGCTTTGACATTGTTTGGAATTGAAGTAAAATGGTGTTGCAGTTCACAAAAGTACATGAATCCTTAATGCCTACGGAACATTCCAGGTTCTGTCAGTAAATGATTATTTTTTACGAGGAGCTGAGCTGCAACACATTTCCATTCCTGTGCTAAAATACAAGACAGTTGTGACAACTGAGGCAGTTGaccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486621 lncRNA upstream 15127 50305647 ~ 50306222 (+) True G1303097
TU1486541 lncRNA upstream 37170 50284000 ~ 50284179 (+) True G1303024
TU1486537 lncRNA upstream 82275 50232428 ~ 50239074 (+) False G1303020
TU1486536 lncRNA upstream 82275 50236651 ~ 50239074 (+) True G1303020
TU1486557 lncRNA upstream 90725 50223183 ~ 50230624 (+) True G1303040
TU1486632 lncRNA downstream 8318 50341772 ~ 50343909 (+) True G1303108
TU1486678 lncRNA downstream 115025 50448479 ~ 50448734 (+) True G1303152
TU1486903 lncRNA downstream 191439 50524893 ~ 50525189 (+) True G1303357
TU1486959 lncRNA downstream 247637 50581091 ~ 50581245 (+) True G1303412
TU1486969 lncRNA downstream 251369 50584823 ~ 50585207 (+) True G1303422
XM_021563509.2 mRNA upstream 135224 50182820 ~ 50186125 (+) False LOC110490239
XM_021563504.2 mRNA upstream 151084 50161944 ~ 50170265 (+) True LOC110490236
XR_005036316.1 mRNA upstream 297521 50019617 ~ 50023828 (+) True LOC118938923
XM_021563501.2 mRNA upstream 457649 49838523 ~ 49863700 (+) True LOC110490234
XM_036944508.1 mRNA upstream 528641 49718790 ~ 49792708 (+) False foxp2
XM_021563526.2 mRNA downstream 21381 50354835 ~ 50357815 (+) True LOC110490251
LOC110490250 mRNA downstream 24985 50358439 ~ 50372219 (+) False LOC110490250
XM_021563542.2 mRNA downstream 227561 50561015 ~ 50577585 (+) True LOC110490256
XM_021563554.2 mRNA downstream 842594 51176048 ~ 51199225 (+) True LOC110490263
XM_036944562.1 mRNA downstream 883453 51216907 ~ 51273536 (+) False LOC110490740
TU1486619 other upstream 18998 50301445 ~ 50302351 (+) True G1303095
TU1486531 other upstream 142784 50178274 ~ 50178565 (+) True G1303015
TU1485120 other upstream 911036 49398458 ~ 49410313 (+) True LOC110490228
TU1485115 other upstream 925491 49395223 ~ 49395858 (+) False G1301706
TU1484840 other upstream 1390761 48930046 ~ 48930588 (+) True G1301458
TU1486590 other downstream 25756 50359210 ~ 50372207 (+) True LOC110490250
TU1487193 other downstream 413908 50747362 ~ 50747715 (+) True G1303641
TU1487387 other downstream 738371 51071825 ~ 51073294 (+) True G1303804
TU1487555 other downstream 965949 51299403 ~ 51299761 (+) True G1303950
TU1487591 other downstream 1017939 51351393 ~ 51359487 (+) True atxn7l1

Expression Profile