RNA id: XM_021563526.2


Basic Information

Item Value
RNA id XM_021563526.2
length 1733
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110490251
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50354835 ~ 50357815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTAGTGCATCTCAAGGGAGGCAAGAGCTAACCACCAATATGGCCACAGCACAGTCAGTCTTAATGTTAGCAGTATGCATTCTCATGATAACTGAGTTCATACTGGCACAGAGGGACTACTATGACATCCTAGGTGTGCCAAAAGATGCCTCCGAGCGCCAGATCAAGAAGGCCTTCCATAAGCTAGCCATGAAGTACCATCCTGACCGAAACAAGAGTCCTGGCGCAGAGGCAAAGTTCAGGGAAATAGCTGAGGCGTACGAGACGTTATCAGACGATAAGAGGAGACTGGAGTATGACCAGTTTGGACATGGCCCCTCCCCTGGTGAGCCAGGCACAGGAGGTGGGAGGAGTGGACAGCACTTCCACCCGAACTTTAACTTCAACTTTGATGACCTGTTCAGAGACTCTGACCTGTTCGGTCATAACCAACACTCCCATCATGCCCATCACAAGAGGGCCTTCAACAGCCACTTCCAGGCCCACCAGGAGGCCCAGAACAAGCACAACAGCCACTTCCAGGCCCACCAGGAGGCCCAGAAGAGACACTTCCAGGGCTCCTTTGGTGGAGAACACTTTGATAACATGTTTGAGGACATGGAGAACATGTTCTCGTATAACGGACACACGGGCGGGGCGGACAGCCGGTTCCAGGGCTCAGCAAAACAACACTGCAGGACAGTGACACAGCGCAGAGGGAACATGGTCACCACATACACAGACTGTTCTTGATTTATTATCACCAGAAACATATCCCACTACTCACTGGGTATGAGTTTAGCTATCGTGGGTATTTTGGAATTACTGTTCATTTAACACTTTGTGGAACATGATTTTGGGTGGTTttggaaagaaagaaaaaaagtgtGCTATAAATGTGTTGATGCCTATGGGCCATAAAACAAACTGTTCTCAAGCAATACCTTTCACTCATTTTGGATATAATTAAACTGGGCTTATGTATTAGGTTCTTACTTCTGGATAGCATTGCATGTTACGATGCCTCCATTTTGGATTTCAATTTACTTTGTTTACATCGTGCTAAGCACCGGCTCTCCCATTTCTCAGGTTCTCTATTGGCTTCCATCTTTGTTTGAGAGTAGCAATTGagttgaagaagaaaaaataagCATTTTATTTCATGTCCTTTCTATTTTCCTCCTGGAGTCTTAAAATTGCTATGCAAAACCAAAGCAATTCTCTCTTTCAGAAAGAGTTCTTCCAATATGATGACAAATTCAGTGTAATAGCACGTTTATATTGCTTATGCCTTGTACTTTAAGAGCTGTTGCATTTGATTGTGGACTTATTAATTCATTCTCCCCAGTGTGTCAAGTTGCTGTCACTTACTTCAAGGCCCATCTTAAACCTTTCCCGGTTATGAATAGAGCACATGAGTTGAATCTCATCGTGAAGTTGAAGAGAACCTAGCTATATACATGTATTTAACATGGTTATACACCATTATCAACTGTTACCTCTTGGTTTTTTTTCTGCAAAGTATGCCTCTTCTGCCGTTTTGTTATGTGCAATATTTGCAGTCGGCAActttgttctctgttctgttgtctctTACCTCGACTTTGCTGCCTGATTGTCATTTTGTGTGAAACCAATGTTCAGTTATTGACTGCTGTCTGCACTTTGTTAATCCTAAGGATGATCTATTTTTAAATATTGAAAGGATGAGGATAAGCACTTGTTTGGAAATAAAAGTGTATTTACTCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486632 lncRNA upstream 10926 50341772 ~ 50343909 (+) True G1303108
TU1486621 lncRNA upstream 48613 50305647 ~ 50306222 (+) True G1303097
TU1486541 lncRNA upstream 70656 50284000 ~ 50284179 (+) True G1303024
TU1486537 lncRNA upstream 115761 50232428 ~ 50239074 (+) False G1303020
TU1486536 lncRNA upstream 115761 50236651 ~ 50239074 (+) True G1303020
TU1486678 lncRNA downstream 90664 50448479 ~ 50448734 (+) True G1303152
TU1486903 lncRNA downstream 167078 50524893 ~ 50525189 (+) True G1303357
TU1486959 lncRNA downstream 223276 50581091 ~ 50581245 (+) True G1303412
TU1486969 lncRNA downstream 227008 50584823 ~ 50585207 (+) True G1303422
TU1486975 lncRNA downstream 239275 50597090 ~ 50597300 (+) True G1303428
XM_021563522.2 mRNA upstream 21381 50321349 ~ 50333454 (+) False cdkn1d
XM_021563523.2 mRNA upstream 21381 50321477 ~ 50333454 (+) False cdkn1d
XM_021563521.2 mRNA upstream 21381 50322621 ~ 50333454 (+) False cdkn1d
XM_021563524.2 mRNA upstream 21381 50323199 ~ 50333454 (+) True cdkn1d
XM_021563509.2 mRNA upstream 168710 50182820 ~ 50186125 (+) False LOC110490239
LOC110490250 mRNA downstream 624 50358439 ~ 50372219 (+) False LOC110490250
XM_021563542.2 mRNA downstream 203200 50561015 ~ 50577585 (+) True LOC110490256
XM_021563554.2 mRNA downstream 818233 51176048 ~ 51199225 (+) True LOC110490263
XM_036944562.1 mRNA downstream 859092 51216907 ~ 51273536 (+) False LOC110490740
XM_036944563.1 mRNA downstream 859120 51216935 ~ 51273536 (+) True LOC110490740
TU1486619 other upstream 52484 50301445 ~ 50302351 (+) True G1303095
TU1486531 other upstream 176270 50178274 ~ 50178565 (+) True G1303015
TU1485120 other upstream 944522 49398458 ~ 49410313 (+) True LOC110490228
TU1485115 other upstream 958977 49395223 ~ 49395858 (+) False G1301706
TU1484840 other upstream 1424247 48930046 ~ 48930588 (+) True G1301458
TU1486590 other downstream 1395 50359210 ~ 50372207 (+) True LOC110490250
TU1487193 other downstream 389547 50747362 ~ 50747715 (+) True G1303641
TU1487387 other downstream 714010 51071825 ~ 51073294 (+) True G1303804
TU1487555 other downstream 941588 51299403 ~ 51299761 (+) True G1303950
TU1487591 other downstream 993578 51351393 ~ 51359487 (+) True atxn7l1

Expression Profile