RNA id: XM_021563538.2


Basic Information

Item Value
RNA id XM_021563538.2
length 2213
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110490255
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50460754 ~ 50467994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAATCATAAATCAATCATTCAAAATCATAAACCGATTTTTCCTGCACGACATCACTGCTACACTTTCACTCTCTGATTGGCTTCTCTTTTTAAAGTACTCAGAACAGCCATGTCTGAGGGGTGAGTCTGTAACTGTCACACTCTGTGCCTTTCAATCAATCACACAACTATGTTGGCTCCCCAGCAGTACTCATAAACCAGAACAGCCATGTCTGAGGGACCGAAAAAGACAAAGTACTCAGCGACTCGCAGGTTACTGCTGAAGCAAAAACTGCTGAAGAAAGCTGGGGTCTTGCTGGTCCAGGAGCAAAGCAACAAGGTGACAGAGAGGGAAAGCGTCTTGAGCGAGAGAGTACCACCGCTGAAACTCTCCGGCCTATCTGTGCAAGAGCTTCAGGAGCTCTGTAAGGAACTGCACAGGAAATGTGACACAGTGGATGAGGCACGATATGATATCGAAGCAAAAGTGCTCAAGAATGAGAAAGAgCTCGTGGACCTGAATGCAAAGATCAACGAGCTGAAAGGGGGGAAGAGACCTAACCTCAAAAGGGTCAAGAAGTCTGCCGACGCTATGCTGGGGGCTCTGACTGAGGCCAAACTCAGCTCCAAGGCGGACTTCAAGTCCAACCTGAAGACAGTCAAGAAGGACaagaaggaagaggagAAAGCGGACCCAGGTGACTGGCGGAAGAATGTGGAGTCCATGTCTGGAATGGAGGGCAGAAAGAAGCTTTTCAATAGCTAAAACAGTTACAAATGCACTGGCTCTGTAGAGATCTGTGGCTGCATTGCCTGATTGTTTACTAATTTTTATTTTGGATTTTCccgaaaaatatattttttgcagTGAGATTGTGTTTTGGGGGAAAGTATGAAGTGTGAGGTATTTTACACTAAAGACTGAGGGAACTATAAAGACTGTGAGAACTAATCAATATTTTTATTAAAAACTATTTAGTGTGGGCTACATGATTTTGATTCCTATCAAGAGAAAATAGTCAAATGTGGAACAACCTAATAATACTCATCATATTAGTTCATTTTGTAAATATTCAATTCCAGTTTGTTATTAAAACACAAATTATTCTGTTTTGGTTTATCTGCCAATATTTATGATTTTAAAAAAAGATGATGAAGTTGGTTCTCTTTCATGTTGTTTACTTTTGCCATAATGCAATACGAAAATCTTAAAAACACATACAGTGTAGATGCTATTAATTACATGGATAAGCCACTGAATGTGTAGTGTTGGATTTTCAAGAGCAGTTCTCCTTTCAGGCTGTGGGTGACACTATAGACAAGCTATTGTACTATTTAACCAAGGTTGCCATTTTCACCTCTGTCACTTCAGTTCAATCTTATCACCACTAGGGTGTGTTATAGCATTACCCTTTCATTTAAAAGTTGACCTGTGGGTGGTTTGTGCTTACAAATGACACCTGGGGGTATCATTCACTACCACTGATCTTTGGTTATCAATGGCAAAGTCATTAATCATCTTGATGATCACAATCTCCCCTGGGCCAAAGACTACTAACAAAGTAATGAGACGTTTGAATAGTCGTGTAGTTCCGGTGAATTATACCATTAAAGAGAACGAAACTGGTAAATTCAGAAGACATAAACATAAGCGCTTTCTAAAATGGGTACCATACTGCGACCAATACGCTGCTACAAATGGTCATAAGAGTGTCTTAAGTCCATAGAGCTGTATTGGAGAGGGGGGGGCAATGTTTTGCGGAGAACGAGCTGGCTAGAGGAAGGGAAAGGCAGTATGGAACAACGCATCCTCTCTGCAGATCATTACAGATGGTACAGTATGAAGTGTGAGGTAGGTGTGTAAACCTGCCATCGGGCCACAAAGGGTGGGGGAAGTCAAGCAGCACGCGTCTGCAAATATGCATTCATTTTTATATGGCAGTGATGTGTTATAGTTTTTTTTCTGTGATAAAGGACAGCTACTGTCCCTAACCCTTTCCACAGCTCTCTTTGGCATGAGACACATTTGCTTGTGCTGGTAGGAAAATGGTCGAGGCAAATGTGATGGGAGTAAACATTTACAATGTCTGACAGGGGCTCTAAAACTATAAACATGCGGTATCCCATTTGTTGTGGGAGACAGAGACACTCTATCCATTTTGTTTCTATTTACTGTACAATGTGATTCTTTGGGTTGCTGATACTCCTCTAATAAAGTCGTCTTTACGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486782 lncRNA downstream 60670 50399501 ~ 50400084 (-) True G1303246
TU1486697 lncRNA downstream 280178 50180351 ~ 50180576 (-) True G1303168
TU1486496 lncRNA downstream 312277 50148213 ~ 50148477 (-) True G1302981
TU1486491 lncRNA downstream 314174 50145739 ~ 50146580 (-) True G1302976
TU1486487 lncRNA downstream 315810 50144712 ~ 50144944 (-) True LOC110490235
TU1486930 lncRNA upstream 73480 50541429 ~ 50541656 (-) True G1303384
TU1486991 lncRNA upstream 114018 50581967 ~ 50582275 (-) True G1303441
TU1486992 lncRNA upstream 114473 50582422 ~ 50582797 (-) True G1303442
TU1486994 lncRNA upstream 116946 50584895 ~ 50585151 (-) True G1303444
TU1486998 lncRNA upstream 120564 50588513 ~ 50588772 (-) True G1303448
XR_005036119.1 mRNA downstream 15856 50391258 ~ 50444898 (-) False LOC110490253
XR_005036120.1 mRNA downstream 15856 50391258 ~ 50444898 (-) True LOC110490253
XR_005036116.1 mRNA downstream 15865 50391258 ~ 50444889 (-) False LOC110490253
XR_005036110.1 mRNA downstream 15869 50391258 ~ 50444885 (-) False LOC110490253
XM_036944557.1 mRNA upstream 318565 50786514 ~ 50929152 (-) False LOC110490257
XM_036944555.1 mRNA upstream 318565 50786514 ~ 50929153 (-) False LOC110490257
XM_036944556.1 mRNA upstream 318565 50786514 ~ 50929153 (-) False LOC110490257
XM_036944552.1 mRNA upstream 318565 50786514 ~ 50929154 (-) False LOC110490257
XM_036944554.1 mRNA upstream 318565 50786514 ~ 50929155 (-) False LOC110490257
TU1486703 other downstream 159747 50299464 ~ 50301007 (-) True LOC110490244
TU1486102 other downstream 796458 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 1621603 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 2756716 47652510 ~ 47704038 (-) True celsr1a
TU1483203 other downstream 3241139 47217536 ~ 47219615 (-) True tbc1d22a
TU1487991 other upstream 731280 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 1318682 51786631 ~ 51793354 (-) False LOC110490744
TU1488527 other upstream 1318682 51786631 ~ 51787491 (-) False LOC110490744
TU1488519 other upstream 1318748 51786697 ~ 51793354 (-) False LOC110490744
TU1488525 other upstream 1318748 51786697 ~ 51793354 (-) False LOC110490744

Expression Profile