RNA id: XM_036944554.1


Basic Information

Item Value
RNA id XM_036944554.1
length 8198
RNA type mRNA
GC content 0.51
exon number 52
gene id LOC110490257
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50786514 ~ 50929155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCAAAGCTCCTTCTCGGTCTCACTATGAAGATACAGTAGCCACTCTCTCCTGCAATCTGAACAATGACTTCAGAGCGGAGGAAAGGAATTCAATAGCATAGAATGCGTTATACAGCACGAAATATCTCAATTGAGCTGCTGTTCTCACAAATGACTTCAATGTACCAACCGTAAATATGTGGATACCTACAGAACACGAGAAATACGGCGTCGTGCTGGCCAGTTTCAGAGGGACGGTCCAGCATGGTTTGCCATTGGAAATTGGGGACACGGTGCAGCTCCTGGAGAAATGTGAAGGCTGGTACAGGGGGTTCGTCCATAAGAATCCAAATGCCAAGGGTATTTTCCCATGCACTTACATTCACTTGAAGAACGCCCATATCAAGAACAAAGGGCAGTTTGAGACTGTCATCCCCACAGAGGACTCTGTTATCACTGAGATGACATCCACCCTGAGAGACTGGGGGGCCATGTGGAAATGGCTCTACGTGGTAAAGACTGTTCAACACACACATGTAGGAATGCATGCAGGAATTCGCACAGACATGCATaagAATGATGGGGATCTGTTCCATCGGTTGTGGCACGTGATGAATGAGATCTTGGACCTGAGGAGACAGGTTCTGGTTGGTCACCTCACCAACGACCGCATGAAAGACGTCAAACAGCACATCACTGCCAGGTTGGACTGGGGAAACGAacagcTGAGTTTGGACCTGGTACCCCGCAGGGAGTTCAGCATGGTGGACCCAGACGAGATCAGCGTCACAGAACTCTTCAAACTGATGGAGCACCGTCACCGTAAGAAGGAGACTCCGGTGCCGGCCAGCACGCACCACCTCTTCGTCCACATGAAGAGCCTGATGAGCTCCAACCTGGGAGAGGAGCTGGAGGTGTTCTTCCACATCTACGACGGCAGGGAGAACAGGCCACTCAGTGAACGGTTCTTTGTCAGACTGAATAAGAACGGAGTGCCCAAGTCGCCGGAGAAGACCGAGAGACAATGCACCCTCTTTGTGgATTTGGGGAGCAGCGATCTCAGAAAAGACGTCTACATTGTTGTTCACATAATGAGAATTGGGCGGATGGGTGCTGGGGAGAAGAAGAACCTGTGTAGTATCCAGTACAGACGGCCCTTCGGCTGTGCTGTGGTCAGTATCGCAGACCTCCTCACGGCAGACTCTAAAGACGACCACCTACTGAAGGTTTACGCATGTACCACGGAAAGCGAGTGGTATCAAATCCACGAGAACATCATCAGGAAGGTCAACTCCAGATACAACCTATCGGGTTCCAACACAGGCCTGGCTGTATCTCTCCAGTTGCTGCACGGGGACATTGAACAGCTGAGGAGAGAGTACATGGTGTTGTTCACCAGAGGAGTGTCCATCACCAAGAAACTGGGCTTCTCTGACATCATCATGCCAGGAGAGATGAGGAATGACCTGTACATGACGCTGGAGAAAGGAGAGTTTGAGAAAGGAGGGAAGAGCGTTGCCAGGAACGTGGAGATCACGGTCTATGTGTTGGACATCgaaggccaggtcatgaagagtTATGTAGCGGCTGGTTCAGGGGAGCCTGGTGGGGATGAGTACCACTCCTTTGTGCTCTACCACAACAACAGTCCCCGCTGGGCTGAGCAGATCAAACTACCCATCCCTGTGGACATGTTCAGGGGCTCTCATGTCCGCTTTGAGTTCAGACACTGCTCCACCAAAGACAAAGGAGAGAAGAAGCTGTTTGGCTACTCCTTCGTTCATCTGATGCAGGAGGACGGACGGACACTGCCGGACGGCACCCACGAGCTCATCATTCACAAGTGTGAGGAGAATGCTAACCTCCAGGACTCGAGCTGCTACCTCAAGCTGCCCTTCTCCAAAGCCAATCTGCCCGGCAACAACCAGGCTGTGAAAGGCACCAAGGAATGTTTTTGGATCACCTCCTTCCTCTGCTCCACTAAACTCACACAGAATGGTGACATGTTAGACCTGCTGAAGTGGAGAGCCCACCCAGAGAGGATCAATGACAGCCTGTTAAAGCTGAAAGAGATCGATGGCTCTGAGATAGTCAAGTTTCTACAGGACACACTTGATACACTCTTTGGGATCTTGGACGAGAGTTCTCAGAGGTATGGGCTGAAGGTGTTTGACTGCCTGGTCCACATCATTAACCTGCTACAGGACAGCAAGTTCCATCATTTCAAGCCCGTCATGGACACCTACATCGAGAGTCATTTTGCTGGAGCCTTGTCTTACAgGGACCTGATCAAAGTACTGAAGTGGTACGTGGATCGCATCGTAGACGCTGAGCACCAGGATCACATTCAGCAGGTCCTCAATgccacTGAGTACATCTTTAAGTACATCATCCAGTCCCGGCGTCTCTTCGCCCTCGCCACCGGGGGTCAGAGCGAGGAGGAGTTCCGTTGCTGCGTCCACGAGCTGTTCATGTCCATCCGCTTCTTCCTGTCCCAGGAGAACAAGATCACCAGCCCCGTCACGCAGACACagGCGGTGTTCCTGAGGACGTTCCCTGCGGTGTACGGGGAGCTGTTGAAGATCTTCACTGTGAGGGAGGTGGCAGGCTTCGTCAGGGAGACGCTGGGCAGCCTGCCTGCCACCGCTCGCGCTGAGTGCCCCCTGGAAGCCGTCAAGCTACATTGCATCGCCAAGACCGTGGAGAGCCAGCTGTACACCAACACAGAGTCGAGGTGTATCCTGCTCCCGGTGGTGTTGCATCTGTTGCAGGCCCACATGCAGGAGCAGAGAGACCTGGTGATGTGTGCCCGTATCCTCACCAGCATGCTCTCTCTCGTCAGGAAGTACGACTCTACCGCCACCGAGCCGGTGGTTTCTGAGGAGGTGGATCTGATAGTGGACAGTCTGCTGGTTGTCCTGATGAGGACCATCCTTGAGATCACGAACAGACCACAAGCAGCCGGGACCAATATGAGACTGCAGTTCCAGGAcatcacgggGGAGTTTGTGGCGTGCCTGCTGGCTCTCCTCAGACAGATGAGTGATAAACATTACCAGCAGCTCCTGCAGGCCTTCACCAGCAAAGATGACCTGAGGGACTTTCTCTTGCAGATCTTCACCGTGTTCCGCATTCTGATTCGACCAGAGATGTTCCTGAAAGATTGGACTGTCATGCGGCTGGTCACCAACAAtgtaatcataacaacagtCCTGTACCTCTCTGATGCTCTGAGGAAGAACTTCCTCAATGACAAGTTTGACTACAAGGTGTGGGACTCGTACTTCTATCTGTCCGTCATCTTCATCAACCAGCCCTGTCTTCAACTGGAGTCCTTCTCTCCGTCCAAGAAGAAGAGGGTACTGGAGAAGTATGGGGACATGAGGGTGATGATGGGTTGTGAGATCTTCAGCATGTGGCAGAACTTAGgTGAGCACAAGTTGAACTTCATCCCGGCGATGATAGGTCCGTTCCTGGAGGTGACCCTGGTTCCCCAGCCTGACCTGAGGAATGTCATGATCCCTATCTTCCATGACATGATGGACTGGGAGCAGAGGAGGAGTGGAAACTTCAAACAGGTGGAGGCCAAGCTGATCGACAAACTGGACGGTCTGATGTCAGAAGGTAAAGGGGACGAGACGTACAGAGAGCTCTTCAACAGCATAATCCCTCTGTTTGGTCCGTACCCTAGTCTGTTGAAGAAGATTGAGAGGGAGACGTGGAGGGAGAGTGGCGTCTCTCTCATCGCCACCGTCACGCGTCTGATGGAGAGGCTGCTGGACTACAGGGACTGCGTGAAGCTGGGGGAGGTGGATGGGAAGAAGATTGGCTGCACCGTCAGTCTGCTGAATTTCTACAAAACTGAGTTGAACAAGGAGGAGATGTACATCCGCTATATCCACAAGCTGTACGAACTGCACCTGAAAGCACAGAATTACACAGAGGCCTCCTACACTCTTCTGTTGTATGACGAGCTGTTGGAGTGGTCCGAAAGGCCCCTCAGAGAGTTCCTCAACTACCCCATGCAGAGCGAGTGGCAGAGGAAGGAGTACCTCCATCTTACCATTGTACAGAACTTTGACAGGGGGAAGTGTTGGGAGAACGGGATCATTCTGTGCAGAGAGCTGGCGGACCAGTACGAGTCTTACTACGACTACAGGAACCTCAGCAAGATGAGGATGATGGAGGCATCGCTGTACGAGAAGATCATGGACCAGCAGAGACTGGAGCCAGAGTTCTTCAGGGTCGGCTTCTATGGCAAGAAGTTCCCCTTCTTCCTAAGGAATAAGGAGTTTGTGTGCCGTGGCCATGACTACGAGAGGCTGGAGGCCTTCCAGCAGCGCATGCTGAATGAGTTCCCCCACGCCATCGCCATGCAGCACGTCAACCAGCCTGACCAGACCATCTACCAGGCCGAGGCTCAGTACCTACAGATCTACGCGGTGAGCCCCATCCCAGAGAGCCAGGACGTGCTGCAGAGAGACGGAGTGGCTGACAACATCAAGAGCTTCTATAAGGTCAACCACATCTGGAGGTTCAGATACGACAGGCCGTTTCACAAGGGCACCAAGGACAAGGAGAATGAGTtcaagaGCTTGTGGGTCGAGAGGACCTCACTAACCCTGGTCCAGAGCCTGCCAGGAATCTCCAGATGGTTcgaggtggagaagagagaacTGGTGGAAGTGAGCCCGTTGGAGAATGCCATCGAGGTCATTGAGAACAAGAACCTGCAGTTGCGGATGCTGATCGCCCAGTGCCAGAGCAGGCAGATGCAGAACATCAACCCCCTTACCATGTGCCTCAACGGGGTCATTGACGCCGCCGTCAACGGGGGGCTCGCACGCTACCAAGAGGCGTTCTTTGTGAAGGACTACATCGTGAATCACCCTGAGGACGGGGAGAAGATCGGACGACTAAGGGAACTCATGTTCGAGCAGGCCCACATCCTGGAGTACGGTCTGGCCGTCCACGAGAAGTTTGTCCCTCAGGACATGCGACCTCTACACAAGAAGCTGGTGGACCAGTTTCATGTGATGAAGTCTAGTCTGGGGATCCAGGAGTTTCCGGCGTATGTGCGCGCCAGCCCCGTGCACTTCACCAATGGCAGCCCGCGTAGTTCGTGCAGGAACTCGGTCCCCAACATCATCAGCCCAGATGGCGCTCGCGTGGTGGCCAGACGCAGTCCCCTCACCTACCCGGCTGTCAACCGCTACTCATCATCATCGCTGTCCTCGCAGGCCTCAAATGAACCCAGCCCATCTACCTCGAGCCTCAGCTCCAATCATTCTGCCTCTCCCAACGTGACCAGCTCTGCTCCGTCCAGCACCAGAGGTTCTCCCCAGCTGCAGGACAAACACAAGCATTCCAGAGAGAACTCCTGCCTCTCTTCCAGGGAGAGACCCGTCAGTGCCATCTACCCCAATCCCCTGGACCCTGCACAGAGGGCGACCCCTCATCAAATAGGTGACACCACACTACCCCGAAGTGATCCTAACCTTTCTGCACCAGACAAAGTGAGACCCACCTTCAGTAGCTGGAGTCTAGACAGTGTAAAAGAGGTCAACAACACACAGTTCTCTGACACTGTGGGAAAGTTgctctgtccccctgtccctcCTAGGCCACCATACCCAGGCTCTTCAGCCAAGACCATAAGGTCGCAGTCCCCGGTCCCAACGTCCAGATCTCCACAAAAgAGTTCACTGCCGCCCTTCACGCCCTCACCCACTGAGTGCCAGTCGGCTGGACTGGTGTCCAACTCGCCCGTCCTCTCTGGTAGCTATAGCAGTGGCATCTCCTCCATGAGTCGCTGCAGTGTGTCCGAGGCGTCGGGCACCGAGGCAACCACTGGAGACCACCCCGCCCACCAGGGGCCCACCATGCCCAACTCGGTCTCCTCGGGCTCGGACGAGCTCATCCGCCGCGAGAACAAGACGCCGCCGCCCTACAGCGTGTACGAGCGCACCAACCCTCGTCGGCCGGTTCCCCTGCCCCacagtctctccatccctcccagtGTGGATCCCCCGGCCCTGCCACCCAAGCCCCACCAGCAACGCACTAGCAGCATGAAGCTGGTCCCAGCATCGGACCCTCGCAGGGCCGACGGGGTGCCCCACGTCCCCAGACCCAGACCTCTCCCCAGGAAGGTCTCCCAGCTATAGGCTGGGTGAGGACCTACAACCCTTGTGGGTTGATGGGTGACACCACTGGCGCGTTTTGCACTTTTTACACTGTCTTCTCTTCAGTTTGGTAATCCCAGGCTCTGCCCAAGACAGACTCACGACTCTTGAGTCTGTCTCATTGTGAAGATCTTTTTTCGAAAGGGCTTTGCATTGACTGACGTTGTCATTCCGCACTTTtagctccagtacagtaggtgccaCGCGGTAAATTGCTACGTTTATCAGAAGAGAAATGAACACAACAAACTTAGGTATTGATTTTTAGATTTCTGATAGATGTAATAGTCCCAATATGTATATATTGGTTATATATAAGAAGTGTTTTGCCTTAAGTATTGGAAAGAGTCTTCTATCCATGAGTCTTGCACGTTTTTGAAGTACACTGTACTTTTCTATATGGCTGACTGGTGCTAGAGGTCTCATGCATATGCATTTCAGTTTATGGTGGTAGCTGAGGGTGTGTTCACATACATCCACGTGGTACCGGAAACAGGAAGCAGAGATTTCCCTATTTGGCCATTTCTTTTCATTGTCATGACCATTTGAAAAGTACTGTATAGCTAAAATCAGTGCCCCGGTTTTATTCTTGGTCAGTAATAGAACATCCCTTTCTCGTAGGAATGGAGAATTTGTGGTCGTAACAAGTCACTCAGAAATACACCCCCTTCGTGAGGGTTCTTCAAACTCGACTCTAAGACATAAAGAGCTCCTTTCGTCTTTGAAATCCCCTTTGGTCAATGCACATAGTTCTTGCATTTGACATGTGCCACTAAATTGTATGTCGTTCTAAGTAAATAAACTGGAGGCCATTGCTGTCAAGAGGGGGCCAGAGATGTGGACACACCCTAACCCTCCTGCATGAAGTGTAGTATGTATGTGGTGGTGGATCTTTGGGGTTTACCAAGTATTGTGCCAAAGgacgatgtactgtatgtatgctgTAACGGCAAAGTAGGAATCCTGAACCTGGAAACACTCCATTGACTAGACAAGCTGATCTTGTACTAGCCCACAATGAAAACAACCGACTTTTGAGACAAATCCAGTTATTTAGATAAAAAgtctttgtgggggggggggggggggggggtataaaaaTGGCAACTGTTACAAGTAACGAATGGTTGGTTATATGATATTAGCACAAATGAGATTGACTACGTTAGCAGTGGTTACATTACCAAGGACTCCAACTCTTAAAATGTTAACCTCTGACCACAATGGGCATTTGAAGTGCAGTATGTATTGTAGAAAAGATGTCCTCTATTTGCCGCTCAGTGAATTGCCAGcaactcgtacacacacacacacacacacacacacacacacacacacacacacacacacacacgagggctGCTGTTCTATTATTTTTTTGAATCTTTTTCGAAAACCTTTTCAACTATTCATTGTATAGTCACGCTTGTACAGTACAGCCGAGTTAGTTTGAGGTGATCTCTCTGTGTTTGACATACAGTACCTGGTGGACAGAGTGTACTGGTATTGAGTCCTACGGTGTCTAGGCAGTCTTCACGTCAGGTGGTTTCCTGTCAGTGTTTTATGAAGAGAAGACAACACTGTTTTTGTAATAAAATCCCCTTCTTTTTTTTAATTGCACGAAATATTGATAACTTAATTCAGTACAACGGTTTTCACAATTAACTTGGGTATGTTTCACTTTTCTATGGTTAATTTCCTTTTTAATTTGTTGCAATTTTTTTTTCATCAAATATTCACATGAATCAGTACTTGAGAAATTGTAAATTATATAATGATGAGATTGTTGTACGTATGCCAAATATACTACCTTTGtgtattactattattgtaaatATTGTGTTTTTAACAAAATGTAGCTAATACACATTTACAGCTTTGAATGTTGGAACAGCAAATTATTGTTATAAATGTCACAAAAAAAATGGTGTTTTAGTGAGTGTAGAAGTCTATAGAGTAATGCATATCTACACCTACAGTAAAACATTTACATGCTCAACTGCCCTAtgtaataaaaaatgttttgctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1487811 lncRNA downstream 1867 50784421 ~ 50784647 (-) True G1304168
TU1487805 lncRNA downstream 11960 50774308 ~ 50774554 (-) True G1304162
TU1487801 lncRNA downstream 27918 50758258 ~ 50758596 (-) True G1304158
TU1487042 lncRNA downstream 158412 50627895 ~ 50628102 (-) True G1303492
TU1487023 lncRNA downstream 171308 50614786 ~ 50615206 (-) True G1303473
TU1487939 lncRNA upstream 79711 51008866 ~ 51010401 (-) True G1304291
TU1487950 lncRNA upstream 122338 51051493 ~ 51056458 (-) True G1304302
TU1488002 lncRNA upstream 222361 51151516 ~ 51151716 (-) True G1304342
TU1488012 lncRNA upstream 240179 51169334 ~ 51169922 (-) True G1304352
TU1488015 lncRNA upstream 245617 51174772 ~ 51175011 (-) True G1304355
XM_021563537.2 mRNA downstream 318539 50460754 ~ 50467975 (-) False LOC110490255
XM_021563540.2 mRNA downstream 318540 50460754 ~ 50467974 (-) False LOC110490255
XM_021563538.2 mRNA downstream 318565 50460754 ~ 50467949 (-) False LOC110490255
XM_021563539.2 mRNA downstream 318568 50460754 ~ 50467946 (-) False LOC110490255
XM_021563541.2 mRNA downstream 318648 50460754 ~ 50467866 (-) False LOC110490255
XM_036944558.1 mRNA upstream 55840 50984995 ~ 51090056 (-) False LOC110490739
XM_036944559.1 mRNA upstream 55840 50984995 ~ 51090056 (-) False LOC110490739
XM_036944560.1 mRNA upstream 55840 50984995 ~ 51090056 (-) False LOC110490739
XM_036944561.1 mRNA upstream 55840 50984995 ~ 51090056 (-) True LOC110490739
XR_005036123.1 mRNA upstream 166680 51095835 ~ 51123704 (-) False LOC110490260
TU1486703 other downstream 485507 50299464 ~ 50301007 (-) True LOC110490244
TU1486102 other downstream 1122218 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 1947363 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 3082476 47652510 ~ 47704038 (-) True celsr1a
TU1483203 other downstream 3566899 47217536 ~ 47219615 (-) True tbc1d22a
TU1487991 other upstream 270074 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 857476 51786631 ~ 51793354 (-) False LOC110490744
TU1488527 other upstream 857476 51786631 ~ 51787491 (-) False LOC110490744
TU1488519 other upstream 857542 51786697 ~ 51793354 (-) False LOC110490744
TU1488525 other upstream 857542 51786697 ~ 51793354 (-) False LOC110490744

Expression Profile