RNA id: XM_021563551.2


Basic Information

Item Value
RNA id XM_021563551.2
length 1419
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110490261
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51124030 ~ 51126635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTATATTAGCGACGGACCGGAAGCAGCATGGACTGAGGATTTCGGTTTCTGCATCATTACGTCCAGCAAACAGAGGGGATGTTGAGAAACGGAGCAGCACAGGTTTTCAGACAGCTGGTTAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATCGATTAACCGTGTCCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTCACCATTTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCCTACCAGTATGTCAAGAAAGGGTCGAGGGTTCTGGTGGAGGGGAAGTTGGATTACGGTGAATACGTAGACAAGAACAACGTCAGACGCCAGGCTACTACCATCATTGCAGACAATATTGTATTCTTAAGCGACAACATTCGAGGGAGGGACCAATGAAGGAAGTGGCACTCTTCATCTAGGAGGAAGACTGGAGCTCTTTCTGTGTAGCTACTCTAGTGTCTATATATCAACTGACTGTTGGAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGAGTAAAACCTCTCTTGACTGTAGAGTGAGTGTTGTTGGAACGGGTATAAACCCAAGTTTGGGGATaacctgcagttatggaatgtttgctcacgagtataattaattggctgatgacctggatggaatcatgtgatccttccttaacccataggagGTACCATCcaattgactacttcaaaatggtcaatgtcctcaatggcactgcccatgctaaaacatgCTTATGAGTATTAAAGTACTCTATCATTCTCTGCGTGCACCAGGGTATACCTAAACATGTGGTTACACGTGTGTATTTTAGCCACCAAAATTGTTATGTTACTAATCTTAGTTTACGCTCATTTGTGGTATTATTGGTGGAGTACAACTAATGGAACTGCAGTTCAATGCAGGATGAAAAGGATCATGCCTTAAAAGTGAGGACTTATGCTTGTTTTCCCAGAGAAGCCAAATCACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACATAAGGCTGAACCCAAAACTATGACTGTGCCAGTTTCATATTGAATGTTATACCACCTGTTTTCTTCTAAGCATGTCTTTCTGTTCTATTTCAAAGATAGTTTGAAACTTGTAACTATTTGTTTATTTTCGGTTTCATTCCACTTTAAAAAGTTAATTTTTTTTTCCCTTCCGGAAATCACCAGATTCTCACCTCCATTCTGTCTGGGCAAATGTTGTACGCATGTTGTTTTAATGTACTTGTATGTATCATGTAgaatatacatttttttcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1487950 lncRNA downstream 67572 51051493 ~ 51056458 (-) True G1304302
TU1487939 lncRNA downstream 113629 51008866 ~ 51010401 (-) True G1304291
TU1487875 lncRNA downstream 220543 50903224 ~ 50903487 (-) True G1304232
TU1487811 lncRNA downstream 339383 50784421 ~ 50784647 (-) True G1304168
TU1487805 lncRNA downstream 349476 50774308 ~ 50774554 (-) True G1304162
TU1488002 lncRNA upstream 24895 51151516 ~ 51151716 (-) True G1304342
TU1488012 lncRNA upstream 42713 51169334 ~ 51169922 (-) True G1304352
TU1488015 lncRNA upstream 48151 51174772 ~ 51175011 (-) True G1304355
TU1488077 lncRNA upstream 146817 51273438 ~ 51274063 (-) False G1304413
TU1488078 lncRNA upstream 146849 51273470 ~ 51274430 (-) False G1304413
XM_021563548.2 mRNA downstream 325 51095835 ~ 51123705 (-) True LOC110490260
XR_005036123.1 mRNA downstream 326 51095835 ~ 51123704 (-) False LOC110490260
XM_036944559.1 mRNA downstream 33974 50984995 ~ 51090056 (-) False LOC110490739
XM_021563546.2 mRNA upstream 114 51126735 ~ 51149243 (-) True c15h12orf56
XM_021563553.2 mRNA upstream 25445 51152066 ~ 51165196 (-) True LOC110490262
XM_021563555.2 mRNA upstream 72602 51199223 ~ 51205927 (-) False LOC110490264
XM_021563556.2 mRNA upstream 148210 51274831 ~ 51280149 (-) False LOC110490265
XM_021563557.2 mRNA upstream 148210 51274831 ~ 51280149 (-) False LOC110490265
TU1486703 other downstream 823023 50299464 ~ 50301007 (-) True LOC110490244
TU1486102 other downstream 1459734 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 2284879 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 3419992 47652510 ~ 47704038 (-) True celsr1a
TU1483203 other downstream 3904415 47217536 ~ 47219615 (-) True tbc1d22a
TU1487991 other upstream 72608 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 660010 51786631 ~ 51793354 (-) False LOC110490744
TU1488527 other upstream 660010 51786631 ~ 51787491 (-) False LOC110490744
TU1488519 other upstream 660076 51786697 ~ 51793354 (-) False LOC110490744
TU1488525 other upstream 660076 51786697 ~ 51793354 (-) False LOC110490744

Expression Profile