RNA id: XM_021563554.2


Basic Information

Item Value
RNA id XM_021563554.2
length 3681
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110490263
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51176048 ~ 51199225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTATATAGACATTTGTTTTGCACTCACGGTAGCCGCCTGGTCTATCTCAAACATCAGCATTTTACAAcattttatttagcctttatttgaGCAGGGAGTCCCACTGAGATCAAGGTCTCTTTTGCAAGGGGGCTCTGCCTTATCTGGTATTCAGATAAGAATAGGTAGACAGTATTGAAAAAGAAGTCAGGAACCTATTTGTTGCACTTTTGGATCTCCTAGCTGAACTCAGAGGTGGGGGTTGCCTGCAGGTCAAGTACTGAGGTGAGGTTGTACAAAGAGCAGTTATTTCAGACGGAGGACTGTGCCCTGCAGACTGCAGTACATCGCCACCAGAACCAAACAAGCAGAGCCTGCCAGTTTTCACTCCAGAAGGAGACATTTAAAGGGATTTTTCTTTAACTTTCATTAAGACTTCATGTCACGCCAAAAAAAACGTTAAAAGGGACAAACAAGCCAGCTTCTCTGCGCTAAGACCGAACCCAGGCGAGCAGTCCCCGATGAGGCTGGAGGCCGCGGCAAGGATGGACCTTATCAAGAAGCTATGGAGAGCACGCAAGCTGATCCTGGTGGTGCTGATCCCGCTGTCGCTGCTGCCGTTGCCCCTCATCCACCCCACCAGCGAGGCCTGCTGTGCGTACGTGTTGATAGTGACAGCGGTGTACTGGGTGTCAGAGGCTGTACCCCTGGGAGCTGCTGCCCTCGTACCAGCCTTCCTATACCCGCTGTTCGGAGTGCTCAAGTCCAGCGAGGTAGCTGCAGAGTACTGTAAGGACACCACTCTGCTGCTGATGGGGGTGATCTGTCTGGCGGCCTCCATAGAGAAATGGAACCTCCACAAACGCATCGCTTTACGCATGGTCATGATTGCCGGAGCCAAGCCTGGCATGTTGGTGCTGGGTTTCATGTGCTGTACGGTCTTCCTGTCCATGTGGCTCAGTAACACCTCCACTACTGCCATGGTGATGCCCATCGCTGAGGCCGTCCTGCAGCAGCTCATCAGCACCGGCGTGGCCGACACCCAGGAAGACTCCGAAACCGTCGAGGCCACCGAGGACGACTGCCTCGGCGaCAAGGAAGAGAATCTAGAAAAGAACCAACTAGAGCGTCTGTATCGCAGAGACAGCTGCGTGAAGCAGGAGCTCTGCACTCTGACTGAGTTGCCGACTGTGGAGACTAACGGGGCTGGTAGGAAGGCCAGTAAGACCAGTCTGGGCCAATTGTCCCTAAAGCAGACCAACGGACAACTGCCATCGACAGCAATCAGCATCCCAGAGCctaagaaggagaaggagagcaaGAACTCTCGCTATCCCACCAAGAGAGATCATATGATCTgtaaatgtctctctctcagcatcaCATACGCAGCCACCATTGGAGGCCTCATCACCATCACGGGCACCTCCACCAACCTTATCTTCGCTGAACAGTTCAACAATCGCTACCCGGATGCGAAGGTGATCAACTTTGGGACCTGGTTCATCTTCAGTTTCCCCATCGCGATCATCATGCTGCTGCTGACCTGGGTCTGGCTGCACTTCCTCTTCCTCGGCTGCAATTTCAGGGAGACATGCTCGTTGAGTAAAAAGCGTAAGACGAGGAGAGAGATGCTGTCAGAGAGGAAGATCCACGACGAGTACATAAAGCTCGGGCCCATCAGCTATCCAGAGGTGGTGACAGGAGTGTTCTTCATCCTGATGACTCTGCTGTGGTTCACCAGAGAACCGGGCTTCGTACCCGGGTGGACGTCGCTGTTCGAGAAGAAAGGCTACAGGACCGACGCCACTGTCTCTGTGCTGCTGGGCTTCCTGCTCTTCCTCATCCCGGCCCGCCGGCCCTTCTCTCGGGCCCCCAGAACCACAGCAGGGGGCGGCTCCACAGAAAAAGACCCAGACCCCCTGGCCCCCATGATCACCTGGAAGGACTTCCAGAATCTCATGCCCTGGGAGATCGTCATCCTTGTGGGAGGGGGCTACGCCTTGGCTGCTGGCTGCAAGgtgtcaggGCTTAGTGTGTGGATTGGCAGACAGCTGGAGCCGATGAGTGGTCTCCCCCCGTGGATGGTCACGCTGCTGGCCTGCCTGCTCGTCTCTGCGGTTACAGAGTTCGCCAGCAACCCTGCTACTCTCACCGTGTTCCTACCTATCCTCTCTGCTCTGtCCGAGACCCTGAAGATCAACCCTCTCCACACACTCATCCCTGCCACCATGTGTGTGTCATTTGGGGTCATGCTGCCCGTCGGGAACCCCCCTAACGCCATAGTGTTCAGTTACGGACACGTGCAGATCAGCGACATGGTGAAGGCAGGCTTTGGGGTGAATCTGATTGGTGTTCTAGTGGTGATGCTGGCCATAACGACCTGGGGCGTGCCCCTCTTCAACCTGACTGAGTTCCCAGACTGGGCCGTCGACAGGAACATCACTGGCAGCTTATAACCACGTGGGGGTGCAGACAgtcgcacagagagagagagaggcagagagcggaAGAATGCAGAAGACGTCTCTAAACAGAGACACTCGCCGTCTCTTTTACTGTAAATGCCAAATTGAAAGGGACTGAGGCTTATACCTTCAGCCGGGCTGGTAACGTCTGAGAATCGTGCAGGTTGGGGAAGACTGAGTGGAAGAAGCACCACAAAGGAAGAGTCGCAGGGGCTGCCTTTTCATAGGCGGCCCAATTCagaatagttttttttgtttgtttttttaccactaattggtattttgaccaatcaagATCAGATATTTTGCCAATAATTGCACAAAATATCTGAATTGggttgcctgtgtaaacacagccaaaaGTAGCATGGAATAGACTCCGACTCTAGTCAATGGATCATATTGCCTTTTACTCCATATTACTGTATGTTGCTGCAAGTGTTACGTTTTATGGCGGTTCTAATCTCTCCAACATATAGCCCAccaaaagaaaaaacattgattcACACATGACACAGCATCACTGCATGTCACATAATATTCCTATACGTTCCGCTAGCACAATAACCACAAAAACAGCATTCTATGCCTATGACACCGCTAACTCGGAGTATACTCTATATTTACAGTAGTATACAATCTTCACGGTGTTACATACCGGATCCCTACTGTTAGTGTGCTGAAacaccctacatagtacactactattgaccagagccatgGAGAATAAGGTGTCAAGGCAGATAAAAGAAACCAGAGAGAAAACTGCAGAGTAAAAGTGCCTCTCCAATCAATAGCCAAATCATGAGCTGTCTGTCGCTATGACGACAGGGCAAAGTGTACATAATTGTAGACCATATGACTTGTATAAAATGCtttatattttgttgttgttgaaccaATTGAAATGTAACCGTGTGCCTTTTTTTTGTACTTTATTCAGTCGCCATGAGAACGTAGGCGCGTTAAGCAATCTAAATCCCACATCTCGGTCTAGAACTTATCCAAAGTTGCACAAGTTCATACGTTGTGGTTTTAGAAGAAGGATCTAGAACCTTTGTAAATACATGCCAACTTGTGATATAAAAGATGTGCCGTGTGTCAAACCAATCCGACGAAGTGTAACGTTCATGAATAACATTTAACGTTGTGGTTCCACTCGTAGTCAACTCACTCAGAATAGGCCCAGATTCATGGGAAATGAAACCAATGTTATAAAATAATAATGAAC

Function

GO: NA

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1487466 lncRNA upstream 6044 51169735 ~ 51170004 (+) True G1303865
TU1487463 lncRNA upstream 10234 51165609 ~ 51165814 (+) True G1303862
TU1487403 lncRNA upstream 79123 51095851 ~ 51096925 (+) True G1303817
TU1487391 lncRNA upstream 99997 51075614 ~ 51076051 (+) True G1303806
TU1487373 lncRNA upstream 165777 51009155 ~ 51010271 (+) True G1303791
TU1487503 lncRNA downstream 75007 51274232 ~ 51274497 (+) True G1303898
TU1487551 lncRNA downstream 99164 51298389 ~ 51298722 (+) True G1303946
TU1487554 lncRNA downstream 99709 51298934 ~ 51299219 (+) True G1303949
TU1487556 lncRNA downstream 100715 51299940 ~ 51300208 (+) True G1303951
TU1487557 lncRNA downstream 101094 51300319 ~ 51300718 (+) True G1303952
XM_021563542.2 mRNA upstream 598463 50561015 ~ 50577585 (+) True LOC110490256
LOC110490250 mRNA upstream 803829 50358439 ~ 50372219 (+) False LOC110490250
XM_021563526.2 mRNA upstream 818233 50354835 ~ 50357815 (+) True LOC110490251
XM_021563523.2 mRNA upstream 842594 50321477 ~ 50333454 (+) False cdkn1d
XM_036944562.1 mRNA downstream 17682 51216907 ~ 51273536 (+) False LOC110490740
XM_036944563.1 mRNA downstream 17710 51216935 ~ 51273536 (+) True LOC110490740
XM_021563565.2 mRNA downstream 104777 51304002 ~ 51323443 (+) True LOC110490269
XM_021563566.2 mRNA downstream 138844 51338069 ~ 51349846 (+) False LOC110490270
XM_036944564.1 mRNA downstream 152136 51351361 ~ 51382579 (+) False atxn7l1
TU1487387 other upstream 102754 51071825 ~ 51073294 (+) True G1303804
TU1487193 other upstream 428333 50747362 ~ 50747715 (+) True G1303641
TU1486590 other upstream 803841 50359210 ~ 50372207 (+) True LOC110490250
TU1486619 other upstream 873697 50301445 ~ 50302351 (+) True G1303095
TU1486531 other upstream 997483 50178274 ~ 50178565 (+) True G1303015
TU1487555 other downstream 100178 51299403 ~ 51299761 (+) True G1303950
TU1487591 other downstream 152168 51351393 ~ 51359487 (+) True atxn7l1
TU1487601 other downstream 196747 51395972 ~ 51397962 (+) True LOC110490271
TU1487699 other downstream 387968 51587193 ~ 51653000 (+) False G1304083
TU1487711 other downstream 387968 51587193 ~ 51647698 (+) False G1304083

Expression Profile