RNA id: TU1487591



Basic Information


Item Value
RNA id TU1487591
length 367
RNA type TUCP
GC content 0.51
exon number 4
gene id atxn7l1
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51351361 ~ 51382579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGCAAGCAACAAGAAGGAAGTGCAATGGCGACATTGGATCGCCAACTACCAAATCCGGATACGTTCCTGTGCAAACCTTGGTCGACTTTTATCAGCGCAGCAAAATTACACTATTCTGACAACTCGCTCGTCGGAAACCGCTTGAAAGAGCTGTACAACTCCTGGGAaggaactaaactcagcaaagaaGAGATGCACGTGTTTGGCCAGTTTCCCAACCAGGAGGATTTCTGTCTCGTCGTCTGCAATGTCTGCAACCAAGTGGTCAAACCCCAGGGCATCCTCACCCACTACGGTGTCTGGGGAGTAGAGTCCCAGTGAGGCAGAGAGAGTAAAGGAcctccccaccctcctcctcctcctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1487581 lncRNA upstream 1671 51347614 ~ 51349722 (+) True LOC110490270
TU1487557 lncRNA upstream 50675 51300319 ~ 51300718 (+) True G1303952
TU1487556 lncRNA upstream 51185 51299940 ~ 51300208 (+) True G1303951
TU1487554 lncRNA upstream 52174 51298934 ~ 51299219 (+) True G1303949
TU1487551 lncRNA upstream 52671 51298389 ~ 51298722 (+) True G1303946
TU1487738 lncRNA downstream 211943 51571430 ~ 51572011 (+) True G1304100
TU1487717 lncRNA downstream 225267 51584754 ~ 51650497 (+) False G1304083
TU1487723 lncRNA downstream 225633 51585120 ~ 51591050 (+) True G1304085
TU1487720 lncRNA downstream 225919 51585406 ~ 51640593 (+) False G1304083
TU1487746 lncRNA downstream 232498 51591985 ~ 51592397 (+) True G1304108
XM_021563566.2 mRNA upstream 1547 51338069 ~ 51349846 (+) False LOC110490270
XM_021563565.2 mRNA upstream 27950 51304002 ~ 51323443 (+) True LOC110490269
XM_036944562.1 mRNA upstream 77857 51216907 ~ 51273536 (+) False LOC110490740
XM_036944563.1 mRNA upstream 77857 51216935 ~ 51273536 (+) True LOC110490740
XM_021563554.2 mRNA upstream 152168 51176048 ~ 51199225 (+) True LOC110490263
XR_005036124.1 mRNA downstream 4525 51364012 ~ 51366313 (+) True LOC118938813
XM_036944566.1 mRNA downstream 26782 51386269 ~ 51404401 (+) False LOC110490271
XM_036944568.1 mRNA downstream 26782 51386269 ~ 51404401 (+) False LOC110490271
XM_021563567.2 mRNA downstream 26783 51386270 ~ 51404401 (+) False LOC110490271
XM_036944569.1 mRNA downstream 34981 51394468 ~ 51404401 (+) False LOC110490271
TU1487555 other upstream 51632 51299403 ~ 51299761 (+) True G1303950
TU1487387 other upstream 278099 51071825 ~ 51073294 (+) True G1303804
TU1487193 other upstream 603678 50747362 ~ 50747715 (+) True G1303641
TU1486590 other upstream 979186 50359210 ~ 50372207 (+) True LOC110490250
TU1486619 other upstream 1049042 50301445 ~ 50302351 (+) True G1303095
TU1487601 other downstream 36485 51395972 ~ 51397962 (+) True LOC110490271
TU1487699 other downstream 227706 51587193 ~ 51653000 (+) False G1304083
TU1487711 other downstream 227706 51587193 ~ 51647698 (+) False G1304083
TU1487716 other downstream 227706 51587193 ~ 51646540 (+) False G1304083
TU1488634 other downstream 555110 51914597 ~ 51915010 (+) True G1304886

Expression Profile