RNA id: XM_021564200.2


Basic Information

Item Value
RNA id XM_021564200.2
length 1710
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110490744
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51785488 ~ 51793354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATAGACATGACACTTCTCCTGCTCCTACTCTCAGCCGTGACCCCAGGACATCTGTGGGAACGTCTCTTCCTCAAGATTGCCACGACAAAGATGTGACTCTCTCCTGTGTCTGCTGCACAGCCGCATTCAGCCGCCTCAAACAGTTGCATCTCATTAAAAGGAGTTTAAAATGGACAGAAGCACAAGACTTCTGCCGGGAGAACTACACTGATCTTGTCACTTTGTACAATCGGGAGGAATCTGAGCAGCTGATACAGTTAAAGCTATCTAATAACAGCTCTAAAGCCTGGATAGGTCTCCATCGCACAGAGCACAGTCTGAAGTGGTCCAATGGAGACGCTGTTAATGACACTGCATGGTCACCACTTCCAAGCCCGTACACAGAGCCAACGTGTGCAGCCATACTCAAAGATAATACAACATGGGAGAATTGTAAAGAGCAGAAATACTTCATGTGTTACAGAGAAGGGTCTGGTGATTCCTTCCTGATTGAACAGAACATGACCTGGTATGAGGCTCAGAGTTACTGCAGAGAGAACTACACTGACCTGGTCAGCATCAGGAACGAGGGACAGAAGGAGGAAGTGAAGAACAAAGGAATGAACAGCACCATTCCTTACTGGATCGGCCTGCTGTATGATGACTGGGAGTGGTCTGATGGAGGGAGATCTGCCTACAGAGACTGGTCAACATTGTATGTTCCAAATGTATACTATCCTATAGCAGAACAGAATCACACTGTTCTTAATCAGACTGACAAAACTATACTCACAGTGGGAAATGGAGGTTATGAAGACCATACACTCTGCTCTGAAGTTCGCATCCACAATATTGGTGAAAGAAAGTCTTGGGAACAGGCTCTGGACTACTGCAAGAATAACTACCATGGACTGCTGCGTACTGAGACAGAAGAAGACCTGGAGGTGATCAAGCAGAAGTTTAATGGGACTGGTTTTACTGGTCCTGTGTGGGTGGGTCTGAGACAGAGCCGTCTCTTTGGGTTCTGGGTCTGGTCCAATGGGCTGCCAGTGGGGTGGAGTAactgggagggagacagacagcctGAACAGCCTCTGTCCAACCATTGTGGTGCCATGGCAATGGAGGAGGGATACAAGTGGAGTGATCAGGATTGTCTGTCCAAACTCTACTTTATTTGTGAAGgataatttacatacattttcccatTTAATTAACTGTCTTTACCATTCCTCACATTTTGATTGATATGTGTTTTTTCTTTAGGTAATTGCTGATTGAAATCACATTTGCAAATCTGTTTTTATGTTTTAACCTTTCAGCATGCAATGCAATGTACAATACACCGGTATAACTTATCAAAAATCTTTGAGTAAAATTGTGTGAGATTTcagatatttaaaaaatgtacacaATAAAATGTAGATAATTATGTCATGTGATTAAAATATTATGTTATCTTGTCTTAACATGTTTGCCATTAAGCAAACTCGTTTATCCTAGGTTTACCCATAGTCATCCCTATTGTAACTGTGGGTTACTGGAATTAATACTCTAGATAGCCTAAATACAATTATATTTAATTAATAGTATCATGCATGTTAACGATGACTAAGGAAATAAAAATGATAGTAAAGTAATATATTGTACATTATGGATATTGTGGGAATAATGGAAATACTCCCAATTTCTGTTCACAACttgacaaaaataaacaaaacataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1488343 lncRNA downstream 53590 51731623 ~ 51731898 (-) True G1304636
TU1488331 lncRNA downstream 71357 51713786 ~ 51714131 (-) True G1304624
TU1488281 lncRNA downstream 134334 51585612 ~ 51651154 (-) False G1304577
TU1488287 lncRNA downstream 135011 51629710 ~ 51650477 (-) True G1304580
TU1488284 lncRNA downstream 135570 51593193 ~ 51649918 (-) False G1304577
TU1488632 lncRNA upstream 119687 51912532 ~ 51912858 (-) True G1304884
TU1488635 lncRNA upstream 120848 51913693 ~ 51915280 (-) True G1304887
TU1488673 lncRNA upstream 150667 51943512 ~ 51943738 (-) True G1304923
TU1488688 lncRNA upstream 159992 51952837 ~ 51953104 (-) True G1304938
TU1488695 lncRNA upstream 164757 51957602 ~ 51957854 (-) True G1304945
XM_021563562.2 mRNA downstream 483991 51289611 ~ 51301497 (-) True LOC110490266
XM_021563564.2 mRNA downstream 498342 51280478 ~ 51287146 (-) True LOC110490268
XM_021563559.2 mRNA downstream 505308 51274831 ~ 51280180 (-) True LOC110490265
XM_021563556.2 mRNA downstream 505339 51274831 ~ 51280149 (-) False LOC110490265
XM_036944574.1 mRNA upstream 24263 51817108 ~ 51819851 (-) False LOC118936382
XM_036944573.1 mRNA upstream 24266 51817111 ~ 51819851 (-) True LOC118936382
XM_021564201.2 mRNA upstream 335142 52127987 ~ 52131038 (-) True LOC110490745
XM_036944577.1 mRNA upstream 386574 52179419 ~ 52183904 (-) True LOC110490277
XM_021563576.2 mRNA upstream 400217 52193062 ~ 52203091 (-) False LOC110490278
TU1487991 other downstream 579627 51199229 ~ 51205861 (-) True LOC110490264
TU1486703 other downstream 1484481 50299464 ~ 50301007 (-) True LOC110490244
TU1486102 other downstream 2121192 49663951 ~ 49664296 (-) True G1302602
TU1485276 other downstream 2946337 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1483446 other downstream 4081450 47652510 ~ 47704038 (-) True celsr1a
TU1488644 other upstream 128650 51921495 ~ 51922528 (-) True G1304896
TU1488739 other upstream 196866 51989711 ~ 51990173 (-) True G1304988
TU1489667 other upstream 1014138 52806983 ~ 52809613 (-) True LOC110490288
TU1490120 other upstream 1262004 53054849 ~ 53056536 (-) False G1306232
TU1490122 other upstream 1262004 53054849 ~ 53056536 (-) False G1306232

Expression Profile