RNA id: XM_036944580.1


Basic Information

Item Value
RNA id XM_036944580.1
length 6684
RNA type mRNA
GC content 0.53
exon number 31
gene id LOC110490288
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52630838 ~ 52809711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGCACGCTCCCGCCCCACAGAGGTTCCCCGCGCCCAGTTGCTTAGGGTTTCCGAGTACGCGCCCACGGCACGGATACGCGCACTCCAGTCTCCGTCCTCTGCTAGACATGGCGGCGGATCTAAACCCAGACTGGCTCTCCTGCCTTCCTTCTTCTTGGAGTTATGGGGTTACTCGGGACGGAAGGATATTCTTCATCAATGAAGAAGCCAAGAGTACGACCTGGCTTCATCCCGTCACCGGAGAGGCTGTCATAACGGGGCACAGAACAACCCCAGATTTACCAACGGGATGGGAGGAGGGATATACGTTCGAAGGAGCCCGCTGCTTCATCAAtcacaaTGAGCGGAAGGTGACCTGTAAGCATCCAGTCTCTGGTCTTCCTTCACAAGACAACTGCATCTTTGTCGTCAACGAACACTTGACTTCTGCAAAGCTTGTCCACCCCGTTACAGATCCTGtcacagtcaaccctgttacggtcaaccctgttacggtcaaccctgttacggtcaaccccgTTACAGATCCTGTCACAGTCAACCCTGTCACAGTCAACCCGGTTACACACCCGGTTGCAGACCCTGTATCAAACAGgccaaAGGCTCCAGAGCAGGCTCCATCAGAGGAGAGCGACCGAGTGAAGAAGGAGCGCCCGATGAGCACCATGAGCCAGGCGTCTAACTACACAGGAGGGTCAGACTACAGCACCTACCCTGGCAGCAGCCCCGCCACACGGCCTTCCAGGTCTTACAAAAAGGTCCACAACTTTGGCAAGAGGTCCAACTCTATTAAGAGGAACCCCAATGCCCCGGCGGTCAAGAGCAACTGGCTTTACAAACAGGACAGCACAGGGATGAAGCTATGGAAGAAGAGGTGGTTTGTGCTGTCTGACATGTGCCTGTTTTACTAcagagATGAGAAGGAGGAGGGCATCCTGGGAAGTATCCTGCTGCCCAGCTTCCACATCTCCATGCTGTCTGTCGACGACCACGTCAGCAGGAAATACGCCTTCAAGGCGACCCACTCCAACATGAGGACATACTACTTCTGCACAGACACGGCCAAAGACATGGAGTCCTGGATGAAAGTGATGACGGACGCAGCCCTGGTCCACACAGAACCAATCAGAAGacTGGATAAGTTGAAGGTGGACCGCTGCTGTCCCCAGGAGGTGAACAACATCCTGAACCACAACCGGGTTCTGACCCGACCAGAGATCCAGAACAACGAGAGGAACCTTGAGCCGCGCCAGCCCTCCATTACCCGCAGCATGGACCGCACAGACGGGGACAGGAAACACAAAGACCCAGAGAAACACACCCTCCAGAGAGAGCGGGAACGCTACACGctgcagagagacggagagagatacTCCCTTCAGAAAGACGGGGTGAGCTACACGctgcagagagacggagagaggtaCCTGTTGCAGAAAGACGGCGAGCGGTACGCCCTGCAAAAAGACGGGGAGCGGTATTCCTTGCAGAAAGACGGAGGCGAACGATATTCTGTGCCTAAAGATGTTCAGATGGAGAAATACGCACCTCAGAAAGACGGGGAGAAGTACTTGGtacagaaagatggagagagatatgcACTGcaaaaagaaggagagagatacaccCTCCAGAAAGATGGACAGAAATACAACCTCCAGAGAGGGGTAGAAAGACACACGTCTATGACTGAGAAAGATCGGTCTGATCGTTATGGGACCCTTGATGAAAGGCAGAAGTATAAAACCCTACGGGAAGGGAGTAAGTGTGGTACCCTGCGGGATGGAGAGAAGCATGGGACGCTCGATAAGTATGGTACCCTTAGGGAAGTGGATAAGTATGGTACCCTCCGTGAAGGGAACAAGTATGGATTCCAGAGGGATGGCAGTGCTGAGAGGCCTCTGACTAAAATCAACAGCATCAAACTCCAACCAGCCCAGGCAGCAGCCATTGCAGCAGCAGTTACAGCCTCCCGCCAGGTACAGGTCTCCCAGCACATGGCCCCACATCAGGTCAACGGCTCTGGAGAGCGGGCTGGGGACCACAGCCCAGGGGAGGTGGTAGGTACCCTGGGCAGAGGAGCAGGGAAGTCCCATGACCCGCctcagaaccagacccagaaccagcaGGCCCAGGAGCCAGAGAAGAGTCTGACCAGAACCAACTCCATGAGGCAGCTGGAGAACTGGGTTAGAACCCAGAGGACACAAGAGGATGACGATACTAGGAGCATCACCTCCTACCAGACCTTGCCCCGCAACATGCCCAGCCACCGTGCCCAGATCGTTCCCCGCTACCCCGAGGGCTACCGTACCCTCCCCAGGAACATGCTGTCCCGACCCGAGAGCATCTGCAGCGTGGCCGGCTCCATCTACGACCGTGCCCTGGCTCCCACATCCAACGCAGACAAGAGGCGCTCCATGAGGGACGACACCATGTGGCAGCTGTATGAGTGGCAGCAGAGGCAGGCCTTCTCCAGGCAGGGCCCACCACCACCAGGCAACTACGGGACCCTGCCCAGCCCCAAGACCATGGGGAACATCTCTGAGCACCAGGGGGTGGCCCCCTCCATCCCCACATCCCCCTCCCATGGATCCCTGGCCCTCTACCACACCTTCTCCCCCCCGGGCCAGCACCGCAGAGACAACCCACCAGGGTCGACCAGGTCCGAGGTGTCCTCACCCATCTTCAGAGGGGACCAGACTATGACTATAGActgcaggcacaggactcacctcACCAAGtataACTACCCACCTGACCGCCGGTCCATGCCAGCAGGCATCCCAGTGCAGACCATTACCCCACAGTCACTCCAGGGCAAGACGCCAGAGGAGCTGACCCTGCTGCTAATAAAGCTGCGTCGGCAGCAGGCTGAGCTCAACAGCATCCGGGAGCACACTGTGGCTCAGCTAATGATCCTTAGCATGGAGGGGCCCAACGCCAAGAGTGAGGTTCTGTCTCATCACCTTCAGAGGAACCTCATGTATCTGGACAGCCAGACGAAGGACAATGAGCCGTTAATCTTCACGATTCACACTATGATTGAGAACTCTGCACCACGGCCTCAACTGTACCAGCAAATCAGCCCCGAGGACTACAAAGACAACTCCTACAGCCACCAGAGGCCAGAGGACATCGACATAGACactaAGCTGAGCAGACTGTGTGAGCAGGACCAAGTGGTGAGAACACAGGAGGAGAAACTACAGCAACTACACAGAGAGAAGAACACCCTGGAGACAGCTTTGCTGTCTGCCAGTCAGGAGATAGAGCAGAGTTCTGACAACCCAGCGGCCGTACAGAGCCTTATACAGCAGAGAGACGTACTGCAGAATGGACTGCTCAGTACCTGTAGAGAACTGGCACGGGTCAACACTGAGTTGGAGCGGTCGTGGAGGGAGTATGATAAAATGGAATCTGGCGTCTCTCTGGCCAAAACAAACCTGTTGGAACAGCTAGAGGCCCTGGGCAGCCCACAGACGGAACCTCCCAGCCAGCAGCATGTCCACATCCAGAAAGAGCTGTGGAGGATCCAAGATGTGATGGAGGCTCTGGCCAAGAACAAACCCCAGAGGACCACTGACACTGGTTTCCTTGGTTCCAAACCCATCTCAAACCTACAGAAGAACGAGCCGGTGACCTTGTTCCGGTCACTCTGTTCTCTCACGGAGGGTGACCGTCAGCCCCCCCGCCCACCCCTCCCCCAGTCCTACGGCTCAACAGAGCGCCCTCCCGCAGtacccccccttccctccccctcggGCGCCCGTCCGCCACCACACACAAGCAAGCACGGCCAGAGGAACGGAACACACAGCAGTCAAGGCCCAGACTACCGTCTGTATAAGAGTGAaccagagctgaccactgtgGCCGAGGAGGTGGACGATAACAACGGAGAGGACAATGACAAGGACAGACTACAGACGGGGCTGACCACTGACAAGGAGCCTGCGGCCACTAAAGTCCCATTAGGAGTACCAGTCTACCCAGTGGGTATCGTTCCTCCCAGGACCAAATCCCCCATGAGCCCCCCAGAGTCCTGCACCATCGCCTCCTACGTCACCCTGAGGAAGGGCAAGAAGCCTGACCCCAGGACTGAGCGTCCTCACAGTGCCGTGGAGCAGACGTGCGGaccgggggagagggagagcggcaGAGCCAGGATGAGTGTAGAGGAGCAGCTGGAGAGGATCAGGAGACACCAGCAGGCCTCGCtcagggagaagaagagaagtagcagcagtatctCCCCCTCAcgctctccatccttctccaagGAGAACCCCTTTGTTACACAGGTCAGGCTGGAGGTGTTCTCCACCGACACCCAGGAGCTGGAGGCAGCACTGCAAGACCTGGAGGAGGTCAGGGGCCGAGTTACAGAGCATCTGGAGAGGGACCGAGGTGCAGAACTGGagctgcagagagacagagctgcagcAGCTGCTGAAGAAGAAATGGAGAAGGGTCGAGCTGCAATAGAAAAGCTGGAGCGAGACATGACTGAGGTGGCTGCAGTGGTGGAGCAGGAGATGGCCAGGACTGCTGTGGCTGTAGAAGAGGAGTTGGAGAGGACTGCTGTGGCTGTAGAAGAGGAGTTGGAGAGAGACCGGGCCGCAGTAGCAGCAGCTGCAGAAGAATTGGAGAGGGCTAGAGCTGCAGCTGAAGAACTCGTCAGAGGGAGGACTGCAGTGTCTCCAGAAGAGGCGCTGGATATTGACACGGCTGCATTGGTGGAGCTGGAGATGGAAATCACTGTGGTGGAGGAGATCAGCTACAGAGCTGAGGAGGTGGATGTCATCCCTGTCCCCAGGCTGAGTGAGGAGGAGCCACAGCCCCGGACGGAGAGCTCCAACATGGACACAGAGGTGTCAGAGACCCAGATGATGGTGATATCGGATCAGGGTGTGAAGCCCCTGTATGTACAATACCTGATCCCTGGACAACATCAacagcagggggagagggagacagagaggagaaacacCCACACTCCCAACACCCTCATTCCCCACAACAGTTTGCCAGCTGCTGTGTCAGAAGCACTGACTCCTGAACTTGAGGAGGACATGATGCAGAGTGAGGTGATGCAAGGGGAGGCCCCGGAGCATGAGACCCAGGGGAACAACATTAACATATCCTATGAACTACCAGTAGAGGGCGCTAAACTCAACAACAACCTGATGGCAGTGAAAAGCCTGCCCTTTCCACcccagtcctcctcctctccctctcctccatctcctcctcaacTCACTGACGGATCCCACTTCATGTGTGTGTAGACGTGTCGAGGAGGTGGTTCTGTGAACTGAACTACACTCACCCAGACATTGACCTTGGTGAGCAGTGACTCATAAGCGATGCCAGCCTGGAGACCCAAGATGGCATCACACAGAGCCATGATGGCACCAGCCAGCCTGCACAGAGCATGCCCAGTAGCTCTCTGTATGTATAGAAACAACTgtagccagacagacagaaagagtaGATCCACAGGCCTGCTCGTATTACTTACTGCCTGCCTACACAATAACTGTGATGCAAAACTTTTTCATTCACACAGAGATATCAGAGGACAAGATTGTATTACCAGAGTGATAATTGatgatcattattattattacaggtATTATGATGGTCTGTTATTTTGGACATGTTCTGTGAGGATGTCTTGAGTGTCTATTAGCTGAGCACTGCTGTGAAAAGGAGGGGACTGTACAGTTGTAAATAAGAGCACTAGAGGAGTCTCACActgggaagatctcaattgcattCTTCTTGCGTCCtgtctcctcgtctccttctcaaatcccgctggaggagaaggtcagaggggaagGATATCTGGCTTTCTCATCTAATGGGTTCTGAGAAGGAGACAAGGACCTGAGGATGGGAGGAGTATGCATTTGAGGTCTTCCCACAATGACACACTATTGAGAGGGCGAAGCACCAACTCTACACACACTAAGGCAGTGCTTTACTTTAACCACACGGGGGCGCCATACGCTCTTGTCTTTTTTACTGGTTTTACTCCCATTTAAGTTTTTAACCTGAGGCCCTAAACTTTTCATTTTCCACATATTTTACACCGCACATTCCCTCATTGTTCAAAGAAGTTgttaatatatacatatataaaacatataGAATGAACTAACTATTCAATGGGTTTATACTTCAATAAGGTGCCACCCTATTGCTGCTGTTGGACAGAGTTTAAATATTTTATAAAAGTTGTGTTTATTTATGTCGGGAGGATCGGAATCTGGTCGCCGCTGACAACCACACGTAAATGTCCTGGGTTAGAATCGATCTGCTTCTCTGTTTTTTTTCCCTACGGCTGAGATATATTTAAAGTAAAATATAGAAGAGAGATAAAATAGTTTTATGAGATTAGGGTTGTGTGTTAGATTCTGTCTGATTGTGTGGAGTcctggacagagagaagagaatagCACATGTATAAGCAATAAGCAGACGTTTTGTTCCTCCAGGACATTAAAATATAATGTACATAAATGTAAAGTTTCATTGTGTAAATTATGTACACCATAGAAAGAGCAGAGCAGAAATTATAAGTCTGAGGTTATTATTATTAGAGTTAAATATGAAAAATGTTCATATCTCATCTGTTTTAtatcatgtgaaataaatgttgATGTTCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1489638 lncRNA downstream 23374 52607119 ~ 52607464 (-) True G1305802
TU1489484 lncRNA downstream 32889 52597706 ~ 52597949 (-) True G1305655
TU1489482 lncRNA downstream 34012 52596619 ~ 52596826 (-) True G1305653
TU1489419 lncRNA downstream 75105 52555508 ~ 52555733 (-) True G1305595
TU1489409 lncRNA downstream 90841 52539767 ~ 52539997 (-) True G1305585
TU1489757 lncRNA upstream 8098 52817808 ~ 52818188 (-) True G1305897
TU1489758 lncRNA upstream 9591 52819301 ~ 52819553 (-) True G1305898
TU1489759 lncRNA upstream 11358 52821068 ~ 52821386 (-) True G1305899
TU1490060 lncRNA upstream 155533 52965243 ~ 52965773 (-) False G1306187
TU1490061 lncRNA upstream 155533 52965243 ~ 52965710 (-) True G1306187
XM_036944578.1 mRNA downstream 2527 52610725 ~ 52628311 (-) False LOC110490287
XM_036944579.1 mRNA downstream 2527 52610725 ~ 52628311 (-) False LOC110490287
XM_021563588.2 mRNA downstream 2531 52610726 ~ 52628307 (-) False LOC110490287
XM_021563589.2 mRNA downstream 2531 52610726 ~ 52628307 (-) True LOC110490287
XR_005036372.1 mRNA downstream 21538 52609171 ~ 52609300 (-) True LOC118938978
XM_021563593.2 mRNA upstream 211561 53021271 ~ 53029431 (-) True LOC110490291
LOC110490294 mRNA upstream 225941 53035651 ~ 53040657 (-) False LOC110490294
XR_005036374.1 mRNA upstream 227622 53037332 ~ 53037459 (-) True LOC118938980
XM_021563611.2 mRNA upstream 245136 53054846 ~ 53056169 (-) False LOC110490297
XM_021563607.2 mRNA upstream 245136 53054846 ~ 53056564 (-) False LOC110490297
TU1488739 other downstream 640665 51989711 ~ 51990173 (-) True G1304988
TU1488644 other downstream 708310 51921495 ~ 51922528 (-) True G1304896
TU1488519 other downstream 837484 51786697 ~ 51793354 (-) False LOC110490744
TU1490120 other upstream 245139 53054849 ~ 53056536 (-) False G1306232
TU1490122 other upstream 245139 53054849 ~ 53056536 (-) False G1306232
TU1490123 other upstream 245139 53054849 ~ 53062280 (-) False G1306232
TU1490119 other upstream 251254 53060964 ~ 53062280 (-) False G1306232
TU1490121 other upstream 251254 53060964 ~ 53062280 (-) True G1306232