RNA id: TCONS_00043828


Basic Information

Item Value
RNA id TCONS_00043828
length 5602
RNA type mRNA
GC content 0.48
exon number 1
gene id XLOC_022196
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12926092 ~ 12931693 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcatctgctccttatttgaagtgtctgcgttgtgtgacagttcattattatgatacgtgtttctaagtatgtgtgcctttctctctctgtgtttgtgtgggtgtcacgtggctgtcagtgggtgtttgttttcatgtcatcagctgagcggtcacatgatctttGTTACCGGAACTGTTCCGTAGCGCCGCTCGGCTgataatcagcgcgctacaggtgtagcgcattttttgtgcctataaatgttcagcgttcctgtctcacgttgtcagttcgttgttttgCTCACGGTTCTTTGTGTTTTGTCAGGCTCTTCTcttcgctggtggtgagtggtcTGGTTGTATTCCATGTTGCAGTATCTGATGCTTCCTGTTTCTTCCTGATGAATGTGTGATCCGCTCTGTTGATGAAGTACATCTGAGACATCCCGGTCTCTTCTATGACGAATGTTTtatctgctctgttgatgagtttTATGAACATTTGATCAGTGTTGCCGAACCAGACCACCACTATATTATTCACCTGTTCAGTGCCTCCAGCCACTCACCATTATTCTGTCTATTTGTGAGAACTATATTAAAAGACTTTGTTTTTTCTTGCAATTGGGTTCCTCATCTTTTATGTCAcgtgacagaacgaactgaccagaTTTGAACCCAGCAAGTATGGAGGTTTCCAGCCAGACCATCCAAGCACTTTTTAATCAAATCACCGAGCTGTCTAATCAAGTTCAGCAACTCAGTTCGGGTCTCCAAGCCGGATCCACGTTGTCAGTGTCTCCAGTCAAACTACCACCCAGTCCTGTTTTTAATGAGAGTTCACGGACCTCCGAACCACGACTACCACCACCACAAAGTTATTCAGGTGAACCCCATTTGTGCAGATCCTTTATTACCAAATGCGATCTTTTTATATCACTCCAGCCCTCATCTTTTCCCACTGAGGCGAGCAAGGTGGCATTTTTAATCAACTTACTAACGGACAAAGCTGCATTATGGGGAACAATGGTCTGGGAGAAGAGACTTCCCTGTTGTGTGTCTTTTAAAGCGTTTTCGGAGGAACTCCGGGTGGTTTTCGATCCAGCGACTTCGGGGAGAGAGGCAGCCAGACGACTCGCTGAGCTCCGTCAGGAGGAGCACAGTGTGGCGGAATATTCTATCGACTTTCGCACCCTGGCGGCCGAGTGCGGGTGGAACAGCGAAGCGCAGTGGGACATGTTCTTTCACGGACTGGCGGACCGTATTAAGGATGAAATCTACGTTTTGGAGCTTCCCAAGACACTGGACGGTCTCATTAACCTGGCCATAAGGGTGGACAATCGCCTTCAGCGCAGGAGTGCCCACAGAGAGCTTCGTTCACAACGTTTGGCTTCACAGACCGGTTGTTCGGAGGCTACACTTCCTGTTCCAGAATCCGAGCCCAGACAAATGGGAGGATTTCGCCTCTCAGCGGAGGAGAAACACCGCCGACGCACAAGTGGTTTGTGTATGTACTGTGGGGTTGCAGGGCATTTTGCAGCCTTATGCACGGTCAAGAACAATAATTCACCTAATGGTAAGCGTTTTTTGGTGGGAGAGATTATGACTGGAAAGGACTCTCCCAATACCACATCTCTACCCATTAAGTTGGGATTTAATTCAAGTTTTCATTCCTGTTATGCGCTCATTGATTCAGGAGCGGAAGGGAACTTTATTGACTCTGATTTAGTTAATGAGTTAAAAATTCCTTTCTCTCCTCTTTCCTCACCCATAGCAGTCCAAGCACTTAGCGGATTATCTCTTCCAACCATCACACACATCACAGCTCCTATTAGACTTGTCACTTCAGGAAATCATACtgaaaacatttctttctttcttactaaATCTGTTAATAATCCTGTCATTTTGGGACATCCGTGGTTGGTCCTACACAAGCCCCACATTAACTGGGGTCACAGTGCAGTTTTTTCATGGAGTGAGAGCTGTCATAAGTCTTGTTTATTGTCTGCTTGTTCCACTGttccttgttctgtgtttcaggaggagcaggtggatctgtcaaacgtgcctcgtgagtaccatgacctgaagagagtgttcagtaagtcccgggctgcttctctacctcctcaccgtccctatgactgtgctatagacttattgccaggtacgtctccgcccaaAGGCAAGTTATATTCACTgtctgttccagagagggaggccatggagaaatatatttctgattctctagcagccaagatcatccgcccgtcttcttcaccggcgggggcgggatttttttttgtgaaaaagaaggatggttccctTCGCCCATGCATTGACTATCGAGGgttgaacagcatcacggttaagaatacctaccctttgccgttgatgtcttcggccttcgagcgcctgcagggggcgaactttttcacaaagttagatctccgcaatgcttatcatttggttcgcataagacccggggatgagtggaaaacagcgtttaacacccctagagggcattttgagtactgcgttctgcccttcggcctttccaacgctccggctgttttccaggcactcgtcaatgacgtgttgagagatatgatagatcagtttatttatgtctacctggatgacattctgattttttctcactctctccaggaacacgttcaacacgtcaggcgagtgttgcagaggctgttagagaatgggctttatgtcaaggcggagaaatgcgtttttcatgcacagtcggTTCAGTTCTTGGGACatattgtgtcagtcgaggggatgcgcatggatccagagaagattcaggctgtggtagattggccaaccccagattcccgtaaggccctgcagaggtttctgggctttgccaatttttaccggcgttttattcgcaatttcagccagctcgccgcacctCTGACTTCCTTGACCTCCTCCAAGATGCCGTTCAGGTGGTCCAGTGCAGCTGAAGCTGCCTTTTCCAAACTAAAAGGCTGCTTCGTTTCAGCCCCTATCCTCATTGCCCCTGATCcttcccggcagtttgtggtggaggtcgatGCGTCTGAGGTTGGGGTCGGAGCCATTCTGTCCCAGCGCTCCTCCTCGGATGGCAAGATCCATCCTTGCGCGTATTTCTCTCATCGATTATCTCCTGCTGAaagaaattacgacattggtaatcgagagtTGTTGGCCGTCAAActtgctttggaggagtggcgccATTGGTTAGAGGGCTCGGGGGTGCCCTTTATCGtctggaccgatcataagaatcTTGAATATATTAGATCTGCTAAAAGATTaaactccaggcaggctcggtgggcattatttttcggacggtTTAATTTTACGATCTCTTACAGACCAGGCTCCAAAAACATCAAACCTGACGCATTATCACGTCTTTTCGACCCATCGGATCGCTTGTCATCACCTGATCCTGTGCTTCCCCAGGGGATTGTTGTAGCGAACATTTCCTGGGAGATCGAGTCGAGGGTTCGCACAGCCTTgaatggggtaacgcccccgatcgGATGCCCACCGAGTCGGTTATTCGTGCCGGAGGAATTACGGTCCGACGTTGTCCGGTGGGGTCATTCCTCCAAGGTAGCTTGTCACCCAGGGGTGAGTCGTACGTTATTCGTTATCAAacaacgattctggtggccaACTATGGCTCGTGATGTGCGCGATTTTGTATTGGCTTGCTCTGTCTGTGCGGTTTCTAAGTCTTCCAATCGCCCACCTGCTGGGCTCCTTCAACCGCTGTCAGTACCTTCAagaccctggtcacacatctcGCTAGATTTTGTTACGGGTCTTCCATCCTCTAACGGTAACACGGTAGTTTTGACCGTGGTGGACAGGTTCTCGAAGGCTGCTCATTTTAtctctctgcccaaattaccatcagccagagagacagcggttgctgtcattgatcatgtctttcgcattcatggcctcccgacggacgtggtttctgacagggggcctcagtttgtctctagattctggagagaattctgccgtttattgggggccactgttagtctttcttctggttttcatccccagagtaacggtcagaccgagagagccaatcaggatcttgagcgCACATTGCGATGTTTGGTCTCGCAGAATCCCTCCTCCTGGAGTCAGCAACTttcgtgggtggagtacgcacataattcgttaccagtgtcgtccacgggcctttctccgtttcagtgtagtctaggttaccagccaccagtttttcccagtctggaatccgaagtcgcggttccctctgttcacgcctttgtccagaggtgccgtcgcacttggaacagggccagacagaccctcctccgaGTGGGgacgcgcaccaaggctaaagccgatcgccaccggtctaagcctcccgtttacgttgtcggtcaaaaagtgtggctttcttcTAAAAACATTCCTCTCCGCACCGTTTGCAATAAgttagctcctaaatttattggcccttttattgtcactaaaatcattagtccagtggcaatccgcctcaaattacctccagcgtacaggagaattcatcccgtatTTCATGTATCCaaagtaaagcccgtttttcatacggcaattaatccGCACACTCCAGTtcccccccccgccgcgtctcgtagatggggagactgcttattcggttaagcgcattctggactctagacggaggggacgaggatttcagtacttggtggactgggaaggttacggtccGGAGGAGAGAAGTTGGGTTCCAGCCGGGGACATACTGgaccactctcttatcgatgattacaatcgccaggtaggcTTGTCTGGGGACGCCAGGAGGCGTCCCTAGGGGagagggtaatgtcacggttgtggattcatctgctccttatttgaagtgtctgcgttgtgtgacagttcattattatgatacgtgtttctaagtatgtgtgcctttctctctctgtgtttgtgtgggtgtcacgtggctgtcagtgggtgtttgttttcatgtcatcagctgagcggtcacatgatctttGTTACCGGAACTGTTCCGTAGCGCCGCTCGGCTgataatcagcgcgctacaggtgtagcgcattttttgtgcctataaatgttcagcgttcctgtctcacgttgtcagttcgttgttttgCTCACGGTTCTTTGTGTTTTGTCAGGCTCTTCTcttcgctggtggtgagtggtcTGGTTGTATTCCATGTTGCAGTATCTGATGCTTCCTGTTTCTTCCTGATGAATGTGTGATCCGCTCTGTTGATGAAGTACATCTGAGACATCCCGGTCTCTTCTATGACGAATGTTTtatctgctctgttgatgagtttTATGAACATTTGATCAGTGTTGCCGAACCAGACCACCACTATATTATTCACCTGTTCAGTGCCTCCAGCCACTCACCATTATTCTGTCTATTTGTGAGAACTATATTAAAAGACTTTGTTTTTTCTTGCAATTGGGTTCCTCATCTTTTATGTCACGTGACacctttactttttaatttatataatttaaatttattttacaataaactcACTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000122176

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044967 lncRNA downstream 93209 12676302 ~ 12832883 (-) True XLOC_022193
TCONS_00044966 lncRNA downstream 95813 12674328 ~ 12830279 (-) True XLOC_022192
TCONS_00043822 lncRNA downstream 138703 12741575 ~ 12787389 (-) False XLOC_022194
TCONS_00043816 lncRNA downstream 680196 12233100 ~ 12245896 (-) True XLOC_022189
TCONS_00044965 lncRNA downstream 905481 12017717 ~ 12020611 (-) False XLOC_022185
TCONS_00043830 lncRNA upstream 630025 13561718 ~ 13565351 (-) False XLOC_022198
TCONS_00044968 lncRNA upstream 630025 13561718 ~ 13565609 (-) True XLOC_022198
TCONS_00044969 lncRNA upstream 691826 13623519 ~ 13625585 (-) True XLOC_022199
TCONS_00044970 lncRNA upstream 874666 13806359 ~ 13809597 (-) True XLOC_022202
TCONS_00044971 lncRNA upstream 886814 13818507 ~ 13824192 (-) True XLOC_022203
TCONS_00043826 mRNA downstream 12961 12900424 ~ 12913131 (-) False XLOC_022195
TCONS_00043827 mRNA downstream 12965 12904410 ~ 12913127 (-) True XLOC_022195
TCONS_00043824 mRNA downstream 13163 12897878 ~ 12912929 (-) False XLOC_022195
TCONS_00043825 mRNA downstream 19864 12900424 ~ 12906228 (-) False XLOC_022195
TCONS_00043819 mRNA downstream 137830 12682353 ~ 12788262 (-) False XLOC_022194
TCONS_00043829 mRNA upstream 357390 13289083 ~ 13295923 (-) True XLOC_022197
TCONS_00043833 mRNA upstream 900654 13832347 ~ 13840433 (-) True XLOC_022204
TCONS_00043835 mRNA upstream 911289 13842982 ~ 13875252 (-) False XLOC_022205
TCONS_00043834 mRNA upstream 911289 13842982 ~ 13875252 (-) False XLOC_022205
TCONS_00043836 mRNA upstream 913227 13844920 ~ 13877898 (-) False XLOC_022205
TCONS_00043813 other downstream 857858 12068120 ~ 12068234 (-) True XLOC_022187
TCONS_00043805 other downstream 1338560 11587417 ~ 11587532 (-) True XLOC_022183
TCONS_00043804 other downstream 1393622 11532340 ~ 11532470 (-) True XLOC_022182
TCONS_00043794 other downstream 2244639 10663942 ~ 10681453 (-) False XLOC_022175
TCONS_00043776 other downstream 3073082 9852896 ~ 9853010 (-) True XLOC_022167
TCONS_00043831 other upstream 704100 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043832 other upstream 782693 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043837 other upstream 923276 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043838 other upstream 929727 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043841 other upstream 1057671 13989364 ~ 13989482 (-) True XLOC_022207

Expression Profile

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