RNA id: TU1489655


Basic Information

Item Value
RNA id TU1489655
length 503
lncRNA type sense_over
GC content 0.47
exon number 4
gene id LOC110490288
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 52630838 ~ 52809711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTGCTAGACATGGCGGCGGATCTAAACCCAGACTGGCTCTCCTGCCTTCCTTCTTCTTGGAGTTATGGGGTTACTCGGGACGGAAGGATATTCTTCATCAATGAAGAAGCCAAGAGTACGACCTGGCTTCATCCCGTCACCGGAGAGGCTGTCATAACGGGGCACAGAACAACCCCAGATTTACCAACGGGATGGGAGGAGGGATATACGTTCGAAGGAGCCCGCTGCTTCATCAAGTAAGCCATTTGGTTTGAATAACAGCGGTTTTTCTCCAGACTTTGTTTGTCTTGGTTTAATAATGTTTGTAATTGTTTTTTCTAGTCTTTGAATTTgaacatgtattgtgtatatgCATACACAATCTGTGAGTGCTGTCGGAGATGTGGTTCGATGCATTCTGTGGCGAGAGCAGCTGGTGTATAGGAAGACTATCCAATGGTGTGTTGGAAGATCggcgtgtgtgtccatgtgtgtaaCTAAAGTGATGTTCTTCTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1489636 lncRNA downstream 29482 52609396 ~ 52707243 (-) True G1305800
TU1489699 lncRNA downstream 41027 52693958 ~ 52695698 (-) True G1305845
TU1489675 lncRNA downstream 63990 52630412 ~ 52672735 (-) True G1305821
TU1489638 lncRNA downstream 129261 52607119 ~ 52607464 (-) True G1305802
TU1489484 lncRNA downstream 138776 52597706 ~ 52597949 (-) True G1305655
TU1489757 lncRNA upstream 8195 52817808 ~ 52818188 (-) True G1305897
TU1489758 lncRNA upstream 9688 52819301 ~ 52819553 (-) True G1305898
TU1489759 lncRNA upstream 11455 52821068 ~ 52821386 (-) True G1305899
TU1490060 lncRNA upstream 155630 52965243 ~ 52965773 (-) False G1306187
TU1490061 lncRNA upstream 155630 52965243 ~ 52965710 (-) True G1306187
XM_021563591.2 mRNA downstream 79787 52653374 ~ 52656938 (-) True LOC110490289
XM_036944578.1 mRNA downstream 108414 52610725 ~ 52628311 (-) False LOC110490287
XM_021563593.2 mRNA upstream 211658 53021271 ~ 53029431 (-) True LOC110490291
LOC110490294 mRNA upstream 226038 53035651 ~ 53040657 (-) False LOC110490294
XR_005036374.1 mRNA upstream 227719 53037332 ~ 53037459 (-) True LOC118938980
XM_021563611.2 mRNA upstream 245233 53054846 ~ 53056169 (-) False LOC110490297
XM_021563607.2 mRNA upstream 245233 53054846 ~ 53056564 (-) False LOC110490297
TU1488739 other downstream 746552 51989711 ~ 51990173 (-) True G1304988
TU1488644 other downstream 814197 51921495 ~ 51922528 (-) True G1304896
TU1488519 other downstream 943371 51786697 ~ 51793354 (-) False LOC110490744
TU1490120 other upstream 245236 53054849 ~ 53056536 (-) False G1306232
TU1490122 other upstream 245236 53054849 ~ 53056536 (-) False G1306232
TU1490123 other upstream 245236 53054849 ~ 53062280 (-) False G1306232
TU1490119 other upstream 251351 53060964 ~ 53062280 (-) False G1306232
TU1490121 other upstream 251351 53060964 ~ 53062280 (-) True G1306232

Expression Profile