RNA id: LOC110490294


Basic Information

Item Value
RNA id LOC110490294
length 2247
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110490294
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53034589 ~ 53040657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTACCCTCTTCGACGAGAAGATGTTCAAGAATGAGGGTATGACGTCAGCCTCAGTAGAGGTGATAGGAGCGGTGTGTAGGAGACGGACCTGGTCTAAATACCTCTACTATCTTAAACACTTTGTTCACATACTGCAGACTGGACAGGCTGAACAGAAACTCGCTGTCagTCTGTTGGTGACTGTTCTAGAGGCGTTCCACTTTGACCATGACACtctggagagagaaatggaggctGCTAAGACCAGGGCCAAAGAGGTTGTGAGCACCGTTGTTGATGACGAcggtgatgaggaagaggaggcggCAGCTGTCGAATCAGAGGAGAGTGACACTGAGGAAGCCATGGAAACTGAAACCGTCAACAGCGGCACGAAAACAACCACCATGGAAACGGCTCTCCTGGTCTCGGAGAGTCTGCCCCTCGTCACCAAGAGGAACGGgcatTCCCAGGCCCCCCCGGACCCTCACCTGCCCCCTCCCAGCTGTATCCTCTTGCCCCCCACCCCAAAGAGAGGGGGACTTAAAGCCCCCGTCAGCAGCCGCACCAACATGCACATCCTAGTGGACACTGGACTCCGGctGCTCCATATGAGTCTGAAGAAGTCCAAGGTCAACTCCTCTGAGGCCTCTGCTCTTGAGATGCTGGATCCCTTCTTGAAGACACACAAGATAACTGAGACGCAGCTGCAAGTGCTGCTGGGATACGCTGAGGAGGACATTTATGACCAATCACGTCAGGCGACAGCCTTCGGCCTGCTACAGGCCATCCTGTCCAGGAAGCTGGTAGTACCATCTCTGGTAGGAGCTGATGAAGACAGTGGCCAAGCTATCTGTTGCCGGGCAGAACGGCATGATCAGTGTGTCTTGTAAAAAGTTATTTGAGTGTTTCTGTTATTTTCACCAGAAGTATATCCTGGATTATCCTCTGGGGAAGAAACTGAGATCACATCTGGATTTTATCGTGGCCCAGCTCAGTTATGAGTTTGACACAGGAAGAGAGGCTTCTCTGGAGCTGATGGCCTATATCTTCCAGACCTTCCCTCAGAACCTGCTGCTGCAGCACAGTGGGTTGTTCTTCGTCCATCTGGCTCTGGCCATGGTTAACGATGACTCGGCTCGCTGTAAGAAGATGGCCGCCGTGGCTATCAAATCACTGCTGAGTCAACTGGACCAGAAACACCAGAACACTCTTTTCACCCTGGTCAACACTTGGCTGTCTGGAGACAAAATATGGACGCGTCGTCTGGGGGCCCAGGTGTGTGGGCTGTTTGTGGAGGTAGAGGGGGTTCGGTTTGGCCTCCGTTTAGATGCCCTGCTGCCCCTCATCGAGAAAGAGATCCACCCCGACAACTTTGAAGACattgaggaggaggagaaggcagCAGACAGACTGCTGTTCAGTTACCTCACCCTGGTCACCAAACTCACCAAGGACTGTAGCCTACTGGAGCTCAGCAAGCCTCAAGACCCACTCACTAACACCCTGGACCCCACCCTGAAAAACCTGTTGAAGAAGCAGGTGGGGCTGCAGACCTCTCTGGCCTTCTCAGCCGTTCAGAAGGATGCCTCACAGAGGGTGGGTGGCCCACCGCACAAAACACAAGGCTATGCAGGCGGTGGTTAACCCTGACATCGCAGCCAGGAAGAAACACAAAAAACAAGATCGAGGCCAAGAAAGAAGATTGAGTTTCTGAAGCCTGGCTACAGAGCCAAGAGACAGAGGAACTCACTCAAGGACTTGGCTATGGTGAAATTATATTATCCATTTTCTAGCAAGGATGGATGAGAAGACCAGGCAATCATATTCTGCTTAATGCAGGAGCTGACAGTCACCTCTGTATGAATTCTCCGTCAAGGATTTGAGAAGTCCAAGATTGTCTAAggggtttacacacacacacacaactttttcaatTAAATACTATATTGTGCTGCTTTCTTTGAACAATCTTATTGGAGAAGTATCAGTGGTCCTGTTGAACATTACAATAATGCTTCTTGGGTGGGAGATAAATAATTTGACCAAAGTTGTATATATTCAGTCTGAAATTCGTGTTACTGAGGGTCGTTTTCACTGTACAAGCTCAAATATGCAATAAAAGTTGTAGCATACAAATTAAGCAGTTAGTGTCCAACAACTGACATTAAAGTTTGAGCATTCCAATGAAAAGGCCTAAACTAACAACCTCAAACTTTATTTACACACCCAACAAAAGTTtaagaaatgaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490108 lncRNA downstream 17755 53016633 ~ 53017896 (-) True G1306222
TU1490099 lncRNA downstream 21214 53013902 ~ 53014437 (-) True G1306217
TU1490097 lncRNA downstream 21853 53012943 ~ 53013798 (-) True G1306216
TU1490076 lncRNA downstream 26762 53006526 ~ 53008889 (-) True G1306195
TU1490079 lncRNA downstream 56852 52978511 ~ 52978799 (-) True G1306198
TU1490124 lncRNA upstream 16766 53057423 ~ 53150195 (-) True G1306233
TU1490179 lncRNA upstream 34536 53075193 ~ 53142075 (-) False G1306242
TU1490180 lncRNA upstream 34536 53075193 ~ 53142075 (-) False G1306242
TU1490193 lncRNA upstream 34536 53075193 ~ 53142075 (-) False G1306242
TU1490141 lncRNA upstream 98047 53138704 ~ 53142075 (-) False G1306242
XM_021563593.2 mRNA downstream 6220 53021271 ~ 53029431 (-) True LOC110490291
XM_036944588.1 mRNA downstream 225940 52634095 ~ 52809711 (-) False LOC110490288
XR_005036126.1 mRNA downstream 225940 52636624 ~ 52809711 (-) False LOC110490288
XM_036944590.1 mRNA downstream 225941 52630838 ~ 52809710 (-) False LOC110490288
XM_021563611.2 mRNA upstream 14189 53054846 ~ 53056169 (-) False LOC110490297
XM_021563607.2 mRNA upstream 14189 53054846 ~ 53056564 (-) False LOC110490297
XM_021563606.2 mRNA upstream 14189 53054846 ~ 53056697 (-) False LOC110490297
XM_036944598.1 mRNA upstream 14189 53054846 ~ 53057122 (-) False LOC110490297
XM_021563610.2 mRNA upstream 14189 53054846 ~ 53057127 (-) False LOC110490297
TU1489667 other downstream 226038 52806983 ~ 52809613 (-) True LOC110490288
TU1488739 other downstream 1045478 51989711 ~ 51990173 (-) True G1304988
TU1488644 other downstream 1113123 51921495 ~ 51922528 (-) True G1304896
TU1488525 other downstream 1242297 51786697 ~ 51793354 (-) False LOC110490744
TU1490120 other upstream 14192 53054849 ~ 53056536 (-) False G1306232
TU1490122 other upstream 14192 53054849 ~ 53056536 (-) False G1306232
TU1490123 other upstream 14192 53054849 ~ 53062280 (-) False G1306232
TU1490119 other upstream 20307 53060964 ~ 53062280 (-) False G1306232
TU1490121 other upstream 20307 53060964 ~ 53062280 (-) True G1306232

Expression Profile