RNA id: XM_021563615.2


Basic Information

Item Value
RNA id XM_021563615.2
length 849
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110490299
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53060950 ~ 53062801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACTAATAATAAAGCAAATTACTGTTTTTATAACCGAGGGTGTTTAGCCAATTACGTTACTATTAGCTggctaatcattcgctttaccaccTAGCCGTAGACTTTGTACTGTTACCTAACCTACCTGCTAAGTGAACAAAGTGGTGAAGGCTGATTCTGTCTCAGGCAGTGACATGGCCAACCCtctgaggagagaggttagaCAGCTGTACAAGAATCTACTGTATCTGGGACGGGAATACCCCCAAGGAGCAGACTACTTCAGGGAGCGTCTGAACAGTGCCTTTGTGAAGAACAAATATGTCACAGACCCCAAGGAGATCAGAAAGCTTGTTGATTGTGGAGAGGATGTGATTAAGGAACTGGGGACCCTGTACTATCTGAAGGAATATAGCGCCATGAAAAAGCGTTTCTACGAAGAAGAATTGTTAGGCCTGCTGAATATAGGCAGACCGACAGACTGATAGCCTAGATGTTTGGCAGCTGAATCTTCAGTATGCGGGtggaccagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaattaaaaaaaatagagAACATTTTGGGTAGTGTAACTTGGTCCCCCAAAAATATtgttttcacctcattttaacattctgtcataaagtgCACATGTCCAACTTTCTAAAAACATTTGTTTCCATGTCAAGGGCTTAAATAAAACTAATGACTAGTAAGTGCCATTAAAGAACAGGGTTGATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490105 lncRNA downstream 24988 53034589 ~ 53035962 (-) True LOC110490294
TU1490108 lncRNA downstream 43054 53016633 ~ 53017896 (-) True G1306222
TU1490099 lncRNA downstream 46513 53013902 ~ 53014437 (-) True G1306217
TU1490097 lncRNA downstream 47152 53012943 ~ 53013798 (-) True G1306216
TU1490076 lncRNA downstream 52061 53006526 ~ 53008889 (-) True G1306195
TU1490179 lncRNA upstream 13047 53075193 ~ 53142075 (-) False G1306242
TU1490180 lncRNA upstream 13047 53075193 ~ 53142075 (-) False G1306242
TU1490193 lncRNA upstream 13047 53075193 ~ 53142075 (-) False G1306242
TU1490141 lncRNA upstream 76558 53138704 ~ 53142075 (-) False G1306242
TU1490152 lncRNA upstream 76558 53138704 ~ 53142075 (-) False G1306242
XM_021563605.2 mRNA downstream 3743 53054846 ~ 53057207 (-) False LOC110490297
XM_021563610.2 mRNA downstream 3823 53054846 ~ 53057127 (-) False LOC110490297
XM_036944598.1 mRNA downstream 3828 53054846 ~ 53057122 (-) False LOC110490297
XM_021563606.2 mRNA downstream 4253 53054846 ~ 53056697 (-) False LOC110490297
XM_021563607.2 mRNA downstream 4386 53054846 ~ 53056564 (-) False LOC110490297
XM_021563600.2 mRNA upstream 23501 53085647 ~ 53108431 (-) False lrmp
XM_021563601.2 mRNA upstream 23501 53085647 ~ 53108431 (-) False lrmp
XM_021563602.2 mRNA upstream 23501 53085647 ~ 53108431 (-) False lrmp
XM_036944599.1 mRNA upstream 23501 53085647 ~ 53109021 (-) False lrmp
XM_021563599.2 mRNA upstream 23501 53085647 ~ 53109194 (-) False lrmp
TU1490120 other downstream 4414 53054849 ~ 53056536 (-) False G1306232
TU1490122 other downstream 4414 53054849 ~ 53056536 (-) False G1306232
TU1489667 other downstream 251337 52806983 ~ 52809613 (-) True LOC110490288
TU1488739 other downstream 1070777 51989711 ~ 51990173 (-) True G1304988
TU1488644 other downstream 1138422 51921495 ~ 51922528 (-) True G1304896
TU1491355 other upstream 694369 53756515 ~ 53757348 (-) True efcab6
TU1491414 other upstream 837164 53899310 ~ 53922128 (-) True G1307309
TU1491599 other upstream 1087898 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 1704826 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 2086629 55148775 ~ 55152111 (-) True LOC110490337

Expression Profile