RNA id: XM_021563600.2


Basic Information

Item Value
RNA id XM_021563600.2
length 5223
RNA type mRNA
GC content 0.55
exon number 36
gene id lrmp
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53085647 ~ 53109210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACCTTGGAGTGACCCATCGTCAACGCCACAACCCTGTTGACAGCATCTGTCGTAAGCTGCAGACCATCCAGCGGCACGACCGTGAGGTTAACCCCTCCTCGCCCTTCCAGATTCCAAAGTTCACGTCCAGCAGCTACGACAGCCCCCAGTCCAGCCTGCGCCGCAACCTGGAAGTCATCCTGAAGAAGCGCGAGAGGGAGGGGCTGTTAACCCCCAAGGGTTCACCCCAGCTTCCCAGGAGCTCCCACTGTCCCAACTCCAGCCCAGCCAACCCCACCATGAACCCCCCAACCCCGGTCAATGCTACGTTTACCATAACGAGTAATcctggggagtggaggggggtaggggtggggttaggagggcaagggagaggaTGGCAGAGGAACTGCTCCACCCCAGCTGTCCAGACTGGAGACACTTTTTTCAGCTTCTCTCATGGTCACCAGTTTACTCAGCCTGAGGCGGGGACAGGGTCTGACGGCAGCGAGAGGCACAGGGCCCCATCTCTAACTCGCACACCTGCACAGAGCCTGCTGTCCTACAACCTCAACTTCTGCTCGTCGGACTCCACGGCCAACCTGCTGCAGTGTGAGCTGCCTTACCCGGCCCAGGTTGTCAAGAGACTGTCCATGGGAGACGgagccaTGTCCTCTGAGAATCGGAAGGAGATGATGACTGAGGTCAGTCTGATCTGTGAAGAGGATTTACTAGACACCATTTTCCATGTTTGTGACACCCAGCGCAGAGGTAAGGTGTACGTGTCTCGTATCGTGGACTACCTGCGTCACACCACCAGCCGGGGTTCTGAGGACAGCGGGCTGGAGGACCTGTGTAATATGCTGGACCCAGAGCACAAAGATGTCTCCATAGACCTGGACACCTACCACGCCATCATGAAGGAGTGGATCGAtgactgcagaaagaatggGGACGACACACCAGAGGACCTAACTCAAGAGTCTGTCAGACTCCGAGACAGCCTGTCAGCTAAGAGGTCTGTCCTGCTGAACATGACCTCGGGTAGTCTGGAGGCATTTGGAGGGGAGGTGTCACGAACAGATTTTGAGACGTCAGACCTGGTGTTCTGTGTGACCGACCTGCAGTTCAGTAACCAGAAGCTTCAGGAGGAGGTGAGGAAGCTGAAGCAGAATGTGGAGACCATGGAGGACCATAACCAGAAACTAGCAGAGGAGAACGAGGAGCTCAAGTCACAGGCCAGACTAGGCCAGCAGCTGGCCCAGAAGGAGAAGATGTTGaaggatgaggtggaggagatgAAGATGAGTCTGAGCTGTACAGAGGAGGGCAGAGCCAGGGCCTCGGCTCAGACCAAACATATGgagagagagaaccagagtcTGATTGCCAAGATAAGCTGTCTTCAGGATGAGAACATCAAGGTCACCATGGAGATGGATGACCTCCAGAAGAGGATGATTGAACTGTGTGACCTAAACGCTGAGCTGCAGGTCCATAACCATTCCTTTGATGCTGTCGTGAGTGAAAAGGAATCCCTCATACTCCAGAAGTGCAGACAGATTGAGGAGCTGATGGCTACAGTGATGGAGTACTCATCAGTCACAGAGCTGTTGAGAGCAGACAAGACCAAGCTGGAGAGCCAGATACGCATGATGCCGCCAGACATGGCAGTTGCAGGTCTCTCCCTGTCGGTGGCGTACAGGTTGAACCACAGCACTTCAGGATCCCTGCAGACAGAACTGGCCCTTGCTCAAACACCTCCGGAGGGTGCGGCGTGTGTGTCGCCACTGAGCTTTGCATCTGTGCTAGATGAGTCTCTGGACAGGGAGGTGTTAGTGGTCCTGCAGGGCCCCACACCTGACCAGATGTCCCCGGAGTTCAAGAGCCTCATCAACAAATTGAAGAGAGATTTTAAGGACGAGGGCCTCTCCATCTTGTCAACACTCAGAGGACTCATGCACCACTATGGAGGACCAGGGGCTAGTAAAGACCCCAGACTGCAGGCGGTGCAGTCTGAGCTGGATCAGAGGAGGACGGAGTGGGGCCTCAGCCTGGAGCAGTTGGACCAGTACACCGACTCCCTGGAGAACGAACTGATCAAGATGGCCAGCAGCATAAGGAGGTCCCGCACTGAGATACTACACCTGTCAGTCAGGGTTCAGGAGCAGGAGAATCAGAAGCGGCAGCTGCGTGAAGAGTTGGACCGGCTAAATACCCCGGGGGACAGCAGGGAGGCCAGCTGCCAGACCCCCGACGAGGAGACACCgGCTGGGGAAGACCTGGACTGGGACGAGGAGTTTGTCCTCCAAGACTTCCTGAAGAACGAGGGGGTGGAGACGTACAGGGACTTCAAGAGTCAGGAGACGGGACcgacagaggaggacagactgacagagaggggGGACCAGCCTGGGGAGGTTGGGGAGAGGTGGACCGTGGTGGGGGGAGAGGGACCAGAGGGGGGAATGAGGGggatctcccttctctctcctctctcggaGCAAAGTGAACCCGACCAGACGGAGGGAGAGGATCTGAGAGaaACCACAGCGGCAACAGACGGTGACCAGAGGGTGAACAGTCTATCCCCACAGGGTGCCAAACTACCAGAATGCTTTGGGCCTGAGGACGCCCACCAGCATGCTGTTGACACCGAGGAGcatctactccctccctcccactcttctCTATCGGATGCAATGAGCCCTGACACCATAGTGCCCCTTCTTCAAGACACACCTCAGACTGGCTCACCAGAACACGACAGGACCATCACTGCTGGGAACAGTCCACCCTCCAGGCTGGCTGAGATGGTATCTCCCAGCTGCACTTACCCTGTGATGAATGAGACCATTTTACTGACTGGCAGGGTCAGCTCCCAGCAGACAGACGGCAGTGAAAGAGGAAAAGGAGAGGACCTCACCACCTCGACCAATATGAGTGACAcacagaagctAACCAAGGACCAGCTGGCTGAGAGAGTGCTAGCAGAGGACAGCACCAGCCTGTTACCAgtactagaggaggaggaggacacacaGGAGTCAGTGGTGCAGGTGCCTACAGTGGAAGTGGACTTGTCAGGGACAGTCAGTCTGACAGGGGACAGAGGCTCTCCGACTATGGATGGACTGAATGTTGCGCCCACTGACCCATCACAGGGTCCAAGGGATGCTACGACACCTGACCCCTCAGGAGCCAAAATTGACTCCCTGGTTCTCAGGAGCAAGTTCAAGAAGGAGCTGGAGCTGTCTCGCAGTATGGATGTCATCGAGGAAGGGAAGGTACAAGAGGACCTGAGTGAAACCAGTGTTACCACCGAGAAGGACATTGAAGCCTCTGTTTCTGAGGACTCAACCGTAGGGGACAGAAGCAGCCTGTCCCCTAACGACAAGGAGATTGAGGTAACTGAGTTCCAGCGCCTGTCCCTGGGCTTTAAGTGTGACATGTTCACCCTGGAgaagaggctgaggctggaggaGAGGTCACGAGACCTGGCAGAGGAGAATGTTCGGAGGGAGGTGTCCAGTTGCCAGGGACTATTACAGGCCCTGGCCCCTCTGTGTGAGGATGATAACCAGTCTATGGAGATCATCCAGAGACTTCAGAAGAACCTGGACATCCTCATCCAGTCCATGACCAGAGTGTCCAGTCGCTCAGAGATGCTGGGCGCCATACACCAGgaGTCTCGTACAGGCACGGCAGTAGAGATAATGGTCCAGCATGTAGAGAACCTGAGGAGGATGTACACTAAGGAACACGCTGAGCTCACTGAGCTGAGGGAGAACATGCTGCAGAACGAGAGGTCCTTCGGATCCCACTCAGGAGGAACACACTCggATGATTTCAGAGGCAAGAAACCTTCTGGAGCAACGTCCTATAAGGCATCAGCCCGACGGGTCAGCATAGCAGCTATCCCCCGGTCTGGTGGGGGAGGGGGACCCATGCATTTTGACATGCCTAATAAACCACAGGACACGGAGGCGGAGAGACTCACCCGCAGATCTCCCTGGAATGTGACGGGGAAGAGCACGGCGCGTCCTCCTCTAAAGCGCTTTGTTAGCTCCGGGGCTTGGATTGAGACTGACGAGCCCTCCCTCGTGATGCTGATGAAGGGGCCTGCCTACGACGCAGACTCTCCTtcagatgaggagagggaagtgCCCGTTCAGAGGAAGTCCAGTCTCACTGAGCTGGGCAACAAAATCACCTCCCTGATTATGCCCAACAAGACtcccatCCTGGCAGAGCAGACCGCAGCAGCCCCGTGTTTGGGCTACTCCTCCCGGCCTGCGTCTGCAGCCAGCGGGTCCCGAGGACTGTGGCTCTGGCTGGCCCTAGTAGTGGTCCTAGCAGGCCTTCTGGCCCTCCTAGCCAGCCTGGTGCTGCAGCCGGCCGTGGATGGAGCGCCCGTGGGGACCGGGGACTCCTGGGTGACCATCCAGCAGCTCCTGTGGCCCTACACAGGGCTGAGGCACAACGGACAGCCACCGGTTTAGAGGGGCTGTGGCCCCAACAGACTGGGATGGACGGGTAGGCACCTGGGTATGGTCAACCCCTGGAAAGTCTTCTGCAACTTGAACCATCACGTGTGATAGACTAGTTAGTGTGTGAAGACAGAAGCAGTCAGTGTTTGTACTGGGGCTACTGAACACTGACCACAGATTTACTATTGGTGCCCGGAGACATTCTACAGCGCCGTTACGGAAGGGGGATTGTAATGTTGCTGGCTGTTGTATATGTGGGCACAATGTTGACCAATCAAGTCAAGGAGGATACCAGCATTGGGCTGTCCAATCATGTAATGGACTTCAGCGCATGCTATCCAATCACGTCACACCTTTTTTGAGTATTTGTTGGTCCATCATCCTATGGACATCAACATGCTTGCTCATGGACAGTGGATTTAGCCGCTTTTACTTTTTAAAACACATTTCATAGTAAACTTCTGAATCTATTATGGTATTTGCGGTTGCCTGAAGAGGCCACCattttaacaattaaaatgccattttttttatgtttaatttATCGTTTGACAGCATTAGTGTTAGGGGATATGTGTGTATCTATTATATTGCGTCTTTGTTATAACCAGCGTTTTGTTACAAACTCATACAAATGGTTTTTACTCTACTTCTTTAAGTGCTCACTTATGAAATTCATCCACTTTTGTATGTTCCAAAGAGGGGGAGTCAAACTCTACACAATAAAGGAACTTTATTCTACAGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490105 lncRNA downstream 49685 53034589 ~ 53035962 (-) True LOC110490294
TU1490108 lncRNA downstream 67751 53016633 ~ 53017896 (-) True G1306222
TU1490099 lncRNA downstream 71210 53013902 ~ 53014437 (-) True G1306217
TU1490097 lncRNA downstream 71849 53012943 ~ 53013798 (-) True G1306216
TU1490076 lncRNA downstream 76758 53006526 ~ 53008889 (-) True G1306195
TU1490141 lncRNA upstream 30273 53138704 ~ 53142075 (-) False G1306242
TU1490152 lncRNA upstream 30273 53138704 ~ 53142075 (-) False G1306242
TU1490192 lncRNA upstream 30273 53138704 ~ 53142075 (-) False G1306242
TU1490200 lncRNA upstream 30273 53138704 ~ 53142075 (-) False G1306242
TU1490133 lncRNA upstream 30853 53139284 ~ 53142075 (-) False G1306242
XM_021563613.2 mRNA downstream 22846 53060950 ~ 53062801 (-) True LOC110490299
XM_021563614.2 mRNA downstream 23331 53060950 ~ 53062316 (-) False LOC110490299
XM_021563609.2 mRNA downstream 23332 53054846 ~ 53062315 (-) True LOC110490297
XM_021563615.2 mRNA downstream 23501 53060950 ~ 53062146 (-) False LOC110490299
XM_021563608.2 mRNA downstream 23508 53054846 ~ 53062139 (-) False LOC110490297
XM_021563618.2 mRNA upstream 419790 53528221 ~ 53548231 (-) False etnk1
XM_036944604.1 mRNA upstream 446607 53555038 ~ 53576166 (-) True aldh1l2
XM_021563620.2 mRNA upstream 470408 53578839 ~ 53584339 (-) True LOC110490308
XM_036945548.1 mRNA upstream 648048 53756479 ~ 53786697 (-) False efcab6
XM_036944615.1 mRNA upstream 680247 53788678 ~ 53817042 (-) True sult4a1
TU1490123 other downstream 23367 53054849 ~ 53062280 (-) False G1306232
TU1490119 other downstream 23367 53060964 ~ 53062280 (-) False G1306232
TU1490121 other downstream 23367 53060964 ~ 53062280 (-) True G1306232
TU1490120 other downstream 29111 53054849 ~ 53056536 (-) False G1306232
TU1490122 other downstream 29111 53054849 ~ 53056536 (-) False G1306232
TU1491355 other upstream 648084 53756515 ~ 53757348 (-) True efcab6
TU1491414 other upstream 790879 53899310 ~ 53922128 (-) True G1307309
TU1491599 other upstream 1041613 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 1658541 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 2040344 55148775 ~ 55152111 (-) True LOC110490337

Expression Profile