RNA id: TU1490279



Basic Information


Item Value
RNA id TU1490279
length 480
lncRNA type sense_over
GC content 0.54
exon number 2
gene id sox5
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53352462 ~ 53471763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccGTGCTCTGTGCTGGCCCTTTAAGAGCTGAGCCCAGATCTAACAGCTTACAGGGCAGGGAGGgtaggaggagggacagagacagagggagggagggtgtgaggctgagtgtgtgtgagcgctacagagagagagagagagagagagagaacagtctccgTTGTCTCAGAGGTTGAAGGATCAATAGAGAGGCTTGTTGTGGCGGTTGTGATTCTGTTCCATCTGTGTGTCGGAGCTGCATGGTGTTAGAAGGAGGAATCCTAGTTCCCACAGACCTATTCCAGCATGCTCACAGACCCTGAGCTACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAATCTCTCCATATGGGGGGACAGATGGAGAAGTAGTCATGGCAACCAGCAGACAGAGactggaagaggaagagagagatgatggaCAGGCTGTCATGCACCTCCCCCTGACCCCCTACTGCAGCAAggtgtcccccct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1490399 lncRNA upstream 20726 53331156 ~ 53331736 (+) True G1306411
TU1490378 lncRNA upstream 47589 53304663 ~ 53304873 (+) True G1306390
TU1490377 lncRNA upstream 48180 53303917 ~ 53304282 (+) True G1306389
TU1490374 lncRNA upstream 54154 53298085 ~ 53298308 (+) True G1306386
TU1490372 lncRNA upstream 55096 53296993 ~ 53297366 (+) False G1306385
TU1490727 lncRNA downstream 215203 53582548 ~ 53583352 (+) True G1306708
TU1490749 lncRNA downstream 222389 53589734 ~ 53629404 (+) True G1306723
TU1490782 lncRNA downstream 307964 53675309 ~ 53710289 (+) True G1306755
TU1490747 lncRNA downstream 331402 53698747 ~ 53705437 (+) True scube1
TU1490733 lncRNA downstream 484780 53852125 ~ 53859551 (+) True LOC110490313
XM_036944603.1 mRNA upstream 210671 53114950 ~ 53141791 (+) True bcat1
XM_036944602.1 mRNA upstream 266302 53077695 ~ 53086160 (+) False cfap94
XM_021563604.2 mRNA upstream 266302 53077725 ~ 53086160 (+) True cfap94
XM_021564204.2 mRNA upstream 299056 53045349 ~ 53053406 (+) False LOC110490748
XM_021563619.2 mRNA downstream 184853 53552198 ~ 53554958 (+) True c15h12orf45
XM_036944605.1 mRNA downstream 217714 53585059 ~ 53705460 (+) False scube1
XM_036944606.1 mRNA downstream 217714 53585059 ~ 53705460 (+) False scube1
XM_036944609.1 mRNA downstream 217714 53585059 ~ 53705460 (+) False scube1
XM_036944611.1 mRNA downstream 217714 53585059 ~ 53705460 (+) False scube1
TU1489077 other upstream 839412 52512629 ~ 52513050 (+) True G1305302
TU1488634 other upstream 1437452 51914597 ~ 51915010 (+) True G1304886
TU1487699 other upstream 1699462 51587193 ~ 51653000 (+) False G1304083
TU1490729 other downstream 213196 53580541 ~ 53583352 (+) False G1306708
TU1490737 other downstream 521883 53889228 ~ 53890391 (+) True LOC110490314
TU1492368 other downstream 1790661 55158006 ~ 55167163 (+) False LOC110490339
TU1492428 other downstream 1895613 55262958 ~ 55266276 (+) False G1308238
TU1492492 other downstream 1980691 55348036 ~ 55349205 (+) True G1308299

Expression Profile