RNA id: XM_021563618.2


Basic Information

Item Value
RNA id XM_021563618.2
length 4489
RNA type mRNA
GC content 0.45
exon number 8
gene id etnk1
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53528016 ~ 53548231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATGGGTGGGATTTTCTGAGAGGCGTTGCCGCACTAGAAGCGAGTAGATTTTTAACCTCCGCAGCCAAGCAAGAGTTCATACAAACGCATTTGCAGCCGCCTACAGTGAACTTCTTGTCAATTTAATCGGAACCTTTCATTATGGCCAACTACATTCATGTACCCGACGAGGCGCCCGCTGTACCCAAAATAGATGTCACATTAGACGAGAACGATTACAGATCTGGTGCATTGAGACTAATCAAGGAACTGAGACCGTTCTGGAAACCATCCGAGGTCAAAATGAAGTTCTTCACAGATGGAATCACCAATAAGTTGCTGGGCTGCTATGTGGGCGGGGTCATGCAGGATGTGGTCCTGGTGCGTATCTATGGCAACAAGACGGAGCTGTTTGTGGACCGGGAGAACGAGGTGAAGAGTTTCCGGACGCTCCACGCACACCGCTGCGCCCCTCGTCTCTACTGTACCTTCAACAACGGCCTCTGCTATGAGTTCCTACAGGGCCAGGCGCTGGAACCTGAACACATCCGCAGCCTGCCCACGTCCAGGCTCATCGCGAGGCAGCTGTCTAAGTACCATGCCATCCATGCTCACAACGGATGGGTGCCCCAGTCAGACCTGTGGCTGACCATGGGCAAGTACTTCGCCCTGATGCCCAAGTTCTTCCAAGACCCAGAGATGAACATGAGgTTAAACAGTGAGGTGCCTAGTCGAAGGCGACTGAGGGAAGAGATGGTGTGGATGCAGCAGAGTCTGTCTGTGCTGGGCTCTCCTGTAGTCCTCTGCCACAATGACCTGCTGTGTAAGAACATAATCTATAATCAGCAAGGAGAAAATGTCAAGTTCATTGACTACGAATACGCTGGGTACAATTACCAAGCCTATGACATTGGGAACCACTTCAATGAATTTGCAGGCCTGAATGAGGTGGACTACAGCCACTACCCAGAGCGGAGTTTGCAGCTGCAGTGGCTGCGCTCCTACCTGGAGGCCTATAAGGAACACAAAGGTCAAGGGTCAGAGGTCACTGAGACAGAGGTGGAGGTGCTCTACGTACAGGTCAACCGCTTCTCCCTGGCATCTCATTTCTTCTGGGGCCTATGGGCTCTGATTCAGGCCGAGTTCTCCACCATTGATTTTGACTTCCTGGGATACGCAGTCCTTCGCTTCAGCCAGTACTTCAAGATGAAGCCAGAAGTTGCAGCGCTGAACTTTCCAGAGTAAAAGTCCTTCTCCCTATCTGGTCCTCATGTCCACCGTAGAGTGCCCTCTAGGGGGTGTCGGAAAGAAGACCCGGAGAGAGCGCAGTCCACGCTTCCTGTGGATTTCATTCGGGCACTCACTAGAGACTCATAGAACCCTATGGGAACTCATAGAACCCTATGGGAACTCATAGAACTATATTAGAAATATAACTATATTAGAACTCATAGAACCCTTTTGAGAACTCCTAGCTGTTAGAAACCATGACTCACCATCCACTGACACTCCACAGGGCCTATTCCATAGCATCACTGCTACAGACAGATCCCTACCTAGTTCGCTATAGAAGCCTAGAACCATGCACTTCTTCATAAAGACTAAAGTCTTTCAGACCCAGTCCTCCAAAATGTCTATAAATAtgcaagaagaagaaaaagaaaaggaaaaaaacTATCATGGCTATTTTTTTGTTAAGATCAACCAAATGAAAACAGTGCCATGTAATGAATGGCGAATTCAGTGTGACATTCCAGTAGCATCTCTCACCCCAGTCTGTGCCCGTCCACAGGGGTAACTCACAACAGAGGAGACCCGGACCAACTCTGGAACTTGTCTCCTGTGTTGTGCTGCTGACTGACTGGGAATATTAGTGTGTGTGGGCTCACTCCAAGCCATTCCTATTGGATATATATACATCTCTTGTCTGGGCTCGCTGGCCCACTGATTATTTAGTCACCATTATATCGGTTGGTTTAATGGTAGGCTACGTAGCAAGTTACAAATATGTGTTGGTGCATCTGGTATAGTCACCAATGTATATTTGTCGGTCGAATGGTTAGATTCACTTATGTACTGTCTCCTAGGTAACAAACAGGAGTGCCTCCATCTTGTTTACATTCTGTTCACCTGACTGAAACGACGTCCGCTTCCCTACCGTAACTGGGCTGTAGTTTGATTCGTGGGAAATGTTGTCGTCATGATGACGGCCAGGAGTATTTCCTGGAAAAACCCTGACCAGGAGAAACTCTGGGCCTGTGGCCTTGTGGTCCGGAAACCCGCCACGCCCTAGTCATGACTATGTTATGTTCACTGTATAAAGTCATTTAGATTCACTTTGAGTTTTTTTTCATGTAACCTCATGGGGCAGTTGCATTTGCCTCGACtcagcctagtcctggactaaaaggcACTTTCAATGGAGAGTTGATGTTCAATGGCGTCACCATTGGAAGTGATTTTAAGTCGAGGATTATAGGCGTCACCTGGTTTATTGTTGCCAGGCTACCCATCCACAACACTCCGGCCAACTGAAGTTTCTTCTCCACGATGAGTGTGGATTTGCTTCCCTCCCTAATGATTTCTAGAATGAGAAGGTATTCTGaccgttctgattggtcccagaaactgaTGGGTTGGGCCAGGTCCGGGCCTACACGGATGACGTTATCAACTTTGCTACTGGTGAGATTTTGTTAAGACGATTCAATCGCTGATtaatttgttttgtacaacgccCCTCATTTTGAAGTCACACAGACAACTTCTAGGATGGCAGTTTCAGACTGAATGTATATAGCGATCGACAGAGCAGCGGAATGAAATTTGGGGTGAATTGTCTGACAAGGTTTACTGCAACTGCCTGTGAGACAATAGAGGTAAGACCTATGATTGGAGGACCAATGGCTTTGGTAGCGAGTGTCTTTGAAAGACATGTATCTTTGTCTGAAAGTGTCTAACAGTATAGTACTTGTCTTTGTTTGTTTATAATGTATGTGCTGCTTGGTTCTGGAAGTTCTTTACGACAAAAAGTTCATCTAATAGGTAAAAACCAACCAATACCAAAGTGCTGATATTTTCTTTGCTTGCACATAATTGCACATTGTATTTTTCCATTTCCGAATGATAATATTGATAATGTACAATATTTACTTTTTAAAGTGCAGTTTTATACCCATTTAAGTGAAGAACTGTTTTCTGACTGGGAGGTCTTGGAGAGTATGTTAGGAGTGTGTTAAAACTGCTTCAACGTTAGTCAGGGCAGGTCTGTGCGGTCACTGTACCTGAATGAAGAGACCACCTTGATAGGCTgctgaaatagcaccctattccctacatggtgcactacttttgaccaggtcccatggGGTGAAgtgtatagggaatatggtgccatttcggATATATAGACCGACTATATATTTTTCCATTCATACTCAGCACTTCCATGCCAACGGTATCAGTCTGCAGACTTGCAGCCGGTGTCCTATGGGTTGCTAGCACCTGTGAGAACTGCATTTCAAGGCACCTTTCAGGAAGCGACTGCGAGTCTGCAGACCTATGCCTCTCCCAATATCCTACTGTTGCTCCTGACCTGTGCAGCCCTCTGCATGTTTAGTTAACCCCATCTACTGTAGCGAAGAAACCACAAACTGGGAAGTCGGACAGGAATCACGGTATATGCCTGTCTTAACTGTGTTCACTTTTTGTTTTGAGCATGCCTTTTATTTTGATGTGGCTTTATTTAATGATAATCAACATGTCTGTTTTCTGGGTCTGTGACTGCAGTGTCTGAGATGGTAGGACTATGTTCCTTCACCGGGGAAATGGAGGACGGGTCAGAGATTGGTTGTTGTTGATCAGATCCTAACTTGAGATGTGTTGTGCGCTAAGTTACTCAACTCTTGTGAATGTTCTCTACTGACATAAGTGCATGGATTTTTGAAAAGGTTTACTTTACACTTGACTCAAGTTAGTGTTGTCCTTTTAGAATTATGTTTGTGTGTTGTCCTCTTGTCTGCAGACCTCGTCATGTTTTTAACCACACAGGGTCCACAAATAGTGCTGATATATACTGTCGCCTACATGTGCGCTATAATGTTAAAAAGGAATCATAAACACTCCGTAACGCAAGTCTGTTTCCCTGTTGAGTttcattctgaaatcaacacaagaccactgtaaaaaaaaaaaaaaaaagcttgtgAAAAGCAACAACACTCAGCTTGACTCAATACTGGTCTGCTTCTTTAAAATGTGTATAAATGCACTCCATTATTTCTTCTCTGGCATTTGTAGCATATGTGTATATGTACATTTCAAAATCAAATGTAATATCTCTGCTTGAACTGTCAAATGTGAATGACTGTACATAGGGGGAGTTTTTTTTTTCTAAACATTGCTCTAACGTCAAGTAGTCTTTTTGTTTAACTGTGAAACGAGCAGACTTTTGAATACTGTACACAAGTGCTTTGAAAGAAGATTAAAGTCTATTACCCTGTCCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490636 lncRNA downstream 85226 53442454 ~ 53442995 (-) True G1306631
TU1490564 lncRNA downstream 258085 53269687 ~ 53270136 (-) True G1306564
TU1490554 lncRNA downstream 272499 53255498 ~ 53255722 (-) True G1306554
TU1490552 lncRNA downstream 279521 53248191 ~ 53248700 (-) True G1306552
TU1490548 lncRNA downstream 289031 53238847 ~ 53239190 (-) True G1306548
TU1491288 lncRNA upstream 79402 53627633 ~ 53672203 (-) False G1307199
TU1491295 lncRNA upstream 95673 53643904 ~ 53644780 (-) True G1307204
TU1491289 lncRNA upstream 108930 53657161 ~ 53664288 (-) True G1307199
TU1491352 lncRNA upstream 197040 53745271 ~ 53755835 (-) False G1307250
TU1491348 lncRNA upstream 200113 53748344 ~ 53755835 (-) False G1307250
XM_021563598.2 mRNA downstream 419011 53085647 ~ 53109210 (-) False lrmp
XM_036944600.1 mRNA downstream 419011 53085647 ~ 53109210 (-) False lrmp
XM_021563599.2 mRNA downstream 419027 53085647 ~ 53109194 (-) False lrmp
XM_036944599.1 mRNA downstream 419200 53085647 ~ 53109021 (-) False lrmp
XM_021563600.2 mRNA downstream 419790 53085647 ~ 53108431 (-) False lrmp
XM_036944604.1 mRNA upstream 6807 53555038 ~ 53576166 (-) True aldh1l2
XM_021563620.2 mRNA upstream 30608 53578839 ~ 53584339 (-) True LOC110490308
XM_036945548.1 mRNA upstream 208248 53756479 ~ 53786697 (-) False efcab6
XM_036944615.1 mRNA upstream 240447 53788678 ~ 53817042 (-) True sult4a1
XM_036944637.1 mRNA upstream 743926 54292157 ~ 54302557 (-) False LOC110490327
TU1490123 other downstream 465941 53054849 ~ 53062280 (-) False G1306232
TU1490119 other downstream 465941 53060964 ~ 53062280 (-) False G1306232
TU1490121 other downstream 465941 53060964 ~ 53062280 (-) True G1306232
TU1490120 other downstream 471685 53054849 ~ 53056536 (-) False G1306232
TU1491355 other upstream 208284 53756515 ~ 53757348 (-) True efcab6
TU1491414 other upstream 351079 53899310 ~ 53922128 (-) True G1307309
TU1491599 other upstream 601813 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 1218741 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 1600544 55148775 ~ 55152111 (-) True LOC110490337

Expression Profile