RNA id: TU1491240


Basic Information

Item Value
RNA id TU1491240
length 4294
lncRNA type sense_over
GC content 0.43
exon number 4
gene id etnk1
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53528016 ~ 53548231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATGGAACCCTCATGGAAAGCTTGATTTTTTTATAGCTAACTCATCTGGCTATTATATAACATGACAACCACTGTCATGACCACGCTAGTCAGAGGAATCAGCTAAAGCACATTTACCTGTTTGGGACCAGGCGAACTGCATGTCTGCATCAATTaggcctgtatgtctgtctgtctgcccactTTCTATGTGTCTGCATTTGTGTCAACTTCGTTTTTCTCGAAACATTCTCACTTCCCTTCAAAATGCAAACTCTTACTCCTCCACCCCAGAGGCCTACAGTATTTCCAGTAGGTTGTCAGTGAGGCATCAGAACCacttagactagagagagggatgataatGGGTTAATAATGCACAGCTTTATCATTAATAATGTGACGGGTCTCTGTCCTGTACTAATCAAaccttcctctctctgcccctttcaGAAAATGTCAAGTTCATTGACTACGAATACGCTGGGTACAATTACCAAGCCTATGACATTGGGAACCACTTCAATGAATTTGCAGGCCTGAATGAGGTGGACTACAGCCACTACCCAGAGCGGAGTTTGCAGCTGCAGTGGCTGCGCTCCTACCTGGAGGCCTATAAGGAACACAAAGGTCAAGGGTCAGAGGTCACTGAGACAGAGGTGGAGGTGCTCTACGTACAGGTCAACCGCTTCTCCCTGGCATCTCATTTCTTCTGGGGCCTATGGGCTCTGATTCAGGCCGAGTTCTCCACCATTGATTTTGACTTCCTGGGATACGCAGTCCTTCGCTTCAGCCAGTACTTCAAGATGAAGCCAGAAGTTGCAGCGCTGAACTTTCCAGAGTAAAAGTCCTTCTCCCTATCTGGTCCTCATGTCCACCGTAGAGTGCCCTCTAGGGGGTGTCGGAAAGAAGACCCGGAGAGAGCGCAGTCCACGCTTCCTGTGGATTTCATTCGGGCACTCACTAGAGACTCATAGAACCCTATGGGAACTCATAGAACCCTATGGGAACTCATAGAACTATATTAGAAATATAACTATATTAGAACTCATAGAACCCTTTTGAGAACTCCTAGCTGTTAGAAACCATGACTCACCATCCACTGACACTCCACAGGGCCTATTCCATAGCATCACTGCTACAGACAGATCCCTACCTAGTTCGCTATAGAAGCCTAGAACCATGCACTTCTTCATAAAGACTAAAGTCTTTCAGACCCAGTCCTCCAAAATGTCTATAAATAtgcaagaagaagaaaaagaaaaggaaaaaaacTATCATGGCTATTTTTTTGTTAAGATCAACCAAATGAAAACAGTGCCATGTAATGAATGGCGAATTCAGTGTGACATTCCAGTAGCATCTCTCACCCCAGTCTGTGCCCGTCCACAGGGGTAACTCACAACAGAGGAGACCCGGACCAACTCTGGAACTTGTCTCCTGTGTTGTGCTGCTGACTGACTGGGAATATTAGTGTGTGTGGGCTCACTCCAAGCCATTCCTATTGGATATATATACATCTCTTGTCTGGGCTCGCTGGCCCACTGATTATTTAGTCACCATTATATCGGTTGGTTTAATGGTAGGCTACGTAGCAAGTTACAAATATGTGTTGGTGCATCTGGTATAGTCACCAATGTATATTTGTCGGTCGAATGGTTAGATTCACTTATGTACTGTCTCCTAGGTAACAAACAGGAGTGCCTCCATCTTGTTTACATTCTGTTCACCTGACTGAAACGACGTCCGCTTCCCTACCGTAACTGGGCTGTAGTTTGATTCGTGGGAAATGTTGTCGTCATGATGACGGCCAGGAGTATTTCCTGGAAAAACCCTGACCAGGAGAAACTCTGGGCCTGTGGCCTTGTGGTCCGGAAACCCGCCACGCCCTAGTCATGACTATGTTATGTTCACTGTATAAAGTCATTTAGATTCACTTTGAGTTTTTTTTCATGTAACCTCATGGGGCAGTTGCATTTGCCTCGACtcagcctagtcctggactaaaaggcACTTTCAATGGAGAGTTGATGTTCAATGGCGTCACCATTGGAAGTGATTTTAAGTCGAGGATTATAGGCGTCACCTGGTTTATTGTTGCCAGGCTACCCATCCACAACACTCCGGCCAACTGAAGTTTCTTCTCCACGATGAGTGTGGATTTGCTTCCCTCCCTAATGATTTCTAGAATGAGAAGGTATTCTGaccgttctgattggtcccagaaactgaTGGGTTGGGCCAGGTCCGGGCCTACACGGATGACGTTATCAACTTTGCTACTGGTGAGATTTTGTTAAGACGATTCAATCGCTGATtaatttgttttgtacaacgccCCTCATTTTGAAGTCACACAGACAACTTCTAGGATGGCAGTTTCAGACTGAATGTATATAGCGATCGACAGAGCAGCGGAATGAAATTTGGGGTGAATTGTCTGACAAGGTTTACTGCAACTGCCTGTGAGACAATAGAGGTAAGACCTATGATTGGAGGACCAATGGCTTTGGTAGCGAGTGTCTTTGAAAGACATGTATCTTTGTCTGAAAGTGTCTAACAGTATAGTACTTGTCTTTGTTTGTTTATAATGTATGTGCTGCTTGGTTCTGGAAGTTCTTTACGACAAAAAGTTCATCTAATAGGTAAAAACCAACCAATACCAAAGTGCTGATATTTTCTTTGCTTGCACATAATTGCACATTGTATTTTTCCATTTCCGAATGATAATATTGATAATGTACAATATTTACTTTTTAAAGTGCAGTTTTATACCCATTTAAGTGAAGAACTGTTTTCTGACTGGGAGGTCTTGGAGAGTATGTTAGGAGTGTGTTAAAACTGCTTCAACGTTAGTCAGGGCAGGTCTGTGCGGTCACTGTACCTGAATGAAGAGACCACCTTGATAGGCTgctgaaatagcaccctattccctacatggtgcactacttttgaccaggtcccatggGGTGAAgtgtatagggaatatggtgccatttcggATATATAGACCGACTATATATTTTTCCATTCATACTCAGCACTTCCATGCCAACGGTATCAGTCTGCAGACTTGCAGCCGGTGTCCTATGGGTTGCTAGCACCTGTGAGAACTGCATTTCAAGGCACCTTTCAGGAAGCGACTGCGAGTCTGCAGACCTATGCCTCTCCCAATATCCTACTGTTGCTCCTGACCTGTGCAGCCCTCTGCATGTTTAGTTAACCCCATCTACTGTAGCGAAGAAACCACAAACTGGGAAGTCGGACAGGAATCACGGTATATGCCTGTCTTAACTGTGTTCACTTTTTGTTTTGAGCATGCCTTTTATTTTGATGTGGCTTTATTTAATGATAATCAACATGTCTGTTTTCTGGGTCTGTGACTGCAGTGTCTGAGATGGTAGGACTATGTTCCTTCACCGGGGAAATGGAGGACGGGTCAGAGATTGGTTGTTGTTGATCAGATCCTAACTTGAGATGTGTTGTGCGCTAAGTTACTCAACTCTTGTGAATGTTCTCTACTGACATAAGTGCATGGATTTTTGAAAAGGTTTACTTTACACTTGACTCAAGTTAGTGTTGTCCTTTTAGAATTATGTTTGTGTGTTGTCCTCTTGTCTGCAGACCTCGTCATGTTTTTAACCACACAGGGTCCACAAATAGTGCTGATATATACTGTCGCCTACATGTGCGCTATAATGTTAAAAAGGAATCATAAACACTCCGTAACGCAAGTCTGTTTCCCTGTTGAGTttcattctgaaatcaacacaagaccactgtaaaaaaaaaaaaaaaaagcttgtgAAAAGCAACAACACTCAGCTTGACTCAATACTGGTCTGCTTCTTTAAAATGTGTATAAATGCACTCCATTATTTCTTCTCTGGCATTTGTAGCATATGTGTATATGTACATTTCAAAATCAAATGTAATATCTCTGCTTGAACTGTCAAATGTGAATGACTGTACATAGGGGGAGTTTTTTTTTTCTAAACATTGCTCTAACGTCAAGTAGTCTTTTTGTTTAACTGTGAAACGAGCAGACTTTTGAATACTGTACACAAGTGCTTTGAAAGAAGATTAAAGTCTATTACCCTGTCCTGTTTATTGTTTTAAAaaaacgttatatatatatatattcccctctGAATATTACCAGTATGTTTAATTACTCTGAGCCAGAAGTATTTCCCTGTTAACCACTGCTCTACCACAAGGGTACCAGGAGATGGCGCCAAACATGATGAAATGAAAAGCCAAGCATTGTTGCGtttgtacaggtaactgccaaaataaaaacactatatccc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490636 lncRNA downstream 85021 53442454 ~ 53442995 (-) True G1306631
TU1490564 lncRNA downstream 257880 53269687 ~ 53270136 (-) True G1306564
TU1490554 lncRNA downstream 272294 53255498 ~ 53255722 (-) True G1306554
TU1490552 lncRNA downstream 279316 53248191 ~ 53248700 (-) True G1306552
TU1490548 lncRNA downstream 288826 53238847 ~ 53239190 (-) True G1306548
TU1491288 lncRNA upstream 91504 53627633 ~ 53672203 (-) False G1307199
TU1491295 lncRNA upstream 107775 53643904 ~ 53644780 (-) True G1307204
TU1491289 lncRNA upstream 121032 53657161 ~ 53664288 (-) True G1307199
TU1491352 lncRNA upstream 209142 53745271 ~ 53755835 (-) False G1307250
TU1491348 lncRNA upstream 212215 53748344 ~ 53755835 (-) False G1307250
XM_021563598.2 mRNA downstream 418806 53085647 ~ 53109210 (-) False lrmp
XM_036944600.1 mRNA downstream 418806 53085647 ~ 53109210 (-) False lrmp
XM_021563599.2 mRNA downstream 418822 53085647 ~ 53109194 (-) False lrmp
XM_036944599.1 mRNA downstream 418995 53085647 ~ 53109021 (-) False lrmp
XM_021563602.2 mRNA downstream 419585 53085647 ~ 53108431 (-) False lrmp
XM_036944604.1 mRNA upstream 18909 53555038 ~ 53576166 (-) True aldh1l2
XM_021563620.2 mRNA upstream 42710 53578839 ~ 53584339 (-) True LOC110490308
XM_036945548.1 mRNA upstream 220350 53756479 ~ 53786697 (-) False efcab6
XM_036944615.1 mRNA upstream 252549 53788678 ~ 53817042 (-) True sult4a1
XM_036944637.1 mRNA upstream 756028 54292157 ~ 54302557 (-) False LOC110490327
TU1490123 other downstream 465736 53054849 ~ 53062280 (-) False G1306232
TU1490119 other downstream 465736 53060964 ~ 53062280 (-) False G1306232
TU1490121 other downstream 465736 53060964 ~ 53062280 (-) True G1306232
TU1490120 other downstream 471480 53054849 ~ 53056536 (-) False G1306232
TU1491355 other upstream 220386 53756515 ~ 53757348 (-) True efcab6
TU1491414 other upstream 363181 53899310 ~ 53922128 (-) True G1307309
TU1491599 other upstream 613915 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 1230843 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 1612646 55148775 ~ 55152111 (-) True LOC110490337

Expression Profile