RNA id: XM_021563620.2


Basic Information

Item Value
RNA id XM_021563620.2
length 2101
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110490308
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53578839 ~ 53584339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCACTGTGCGCAGAGCAGGCTTCCCAAAGTGTCATGGCGTCTCCCTTGAAGGGAGTTAGGACCTGGAAAATCTAGCCATTGGTAGTAGTGACTTTCTTCTCTAAATCGCCCTGTTAAAAAACATTTACTTATCAAAAAGGATATTTTTCAAGAGAAAGACGTCACCATGGGGACTGTCCACGCCAGGAGTATGGACCCTCTCCCGATGCACGGGCGTGACATGGGCGTTCATCCCGACGACATGATTGAGGTGCAGGAGGCAGAACAAGAGACTAAACAGGAGGTCCTGGAAAACAAAGACGTTGTTGTCCAACATGTCAACATTGAGGGCTTGGGCAGAACCAAAGAGGATCTGCTGGGCTATGAAATCTCTGAGGTCTTCCATGCTAAAAACCTTATTGATGTCATGAAGAAGTCTCATATTGCCAGACAGAAACTGCTGCGTCTGGGCATTTTCAAAGAGGTGGAGGTTGTCATAGATACATCAGATGGTGCGGATGCGTTGCCCAATGGTCTGGACGTGACGTTCGAGGTGACAGAGATGAAGAGGCTGACGGGCAGCTACAACACCATGGTCGGCAACAACGAAGGCAGCATGGTGTTGGGTGTGAAGCTTCCTAACGTGTTTGGCCGTGCGGAGAAGTTAACCTTCCAGTTTTCCTACGGGACTAAGGAGACTTCCTACGGCCTGTCCTTCTTCAAGCCCCAGCCAGGCAACTTTGAACGCAACCTCGCTCTAAACCTGTACAAAGTCACAGGCCAGTTTCCATGGAGCTCCctcaaagagacagacagaggagtctCCACTGAGCTCAATtTTCCTCTGTGGAGGACCAACCACACTCTGAAGTGGGAGGGTGTGTGGAGGGAGCTGGGCTGTCTGGCACGCAGTGCCTCCTTTGCCGTGCGAGAAGAGAGCGGGCACACCCTCAAGTCTGCCCTCTCGCACACCATGTCCATTGACACCAGGAACTCTGCCATCTTCCCCAAGAAAGGTGCCTTACTGAGGATCAACCagGAGCTGGCTGGCTATACAGGCGGAGACGCCAGCTTCCTGAAGGAGGACTTTGAGCTGCAGGTCAACAGACGGCTGGTCTGGGACTCGGTCCTCTCCGCCTCCCTCTGGGGTGGGTGTCTCCTCCCCATCGGAGGCAGACCGTCCTCCATCGCTGACAGGTTCTATCTGGGCGGTCCCACCAGTGTGCGAGGTTTTGGAATGTACAGCATCGGCCCACAGAGCGAGGGTGACTACCTGGGAGGAGAGGCGTACTGGGCAGGCGGGCTCCACCTGTACACTCCTCTACCCTTCCGTCCGGGCCGGGCCGGCTTCGGAGACCTCTTCAGGACACACTTCTTCCTCAACGCTGGGAACCTGTGCAACCTCAACTACGGAGAGGGTCCAAGAGCACACCTACAGAGGCTGGCGGAGTGTATCCGCTGGTCGTATGGAGCAGGCATCGTGTTGCGTCTCGCGAACATCGCCAGGCTGGAGCTCAACTACTGCATTCCCATGGGGGTTCAGAGTGGAGacagGATATGCGACGGCGTCCAGTTTGGAGCAGGAATCCGCTTCCTGTGATGTCATCACCCTGCCGCCCGGGTCCAGCAGCAGAGAGCACGATGGGAAAGGGAGAAGAGCATTGTCACTTGTTATCCGTTGAGTGTAACACTAGCTGTGGGAGCCTACCAGAATGCACGGTTCTGGAGGAGTGCCCCGCCACCCTTTTTgatattaaccaatgatatcaccCACTGTTTGCTGTGTTAATTTCCACCAACCAATTACATTTCTGGCCAGACAAAGAGATTTGGTTTTATCTCCCCTGCCTTCCAAGACTGCTGCCTGCCCTATCCATAGGGAAGTGACTATTGGTTTTGGTTCTAGATTAATTTGACCCTATTAGAACTCTTTCCAACTGATTTGTCGGTTCTGCTGTTTGACGTGGAGAATTGAGAGTTGACTCCCCCTCTCCACAGCAGCCCCTGTGAATCTGAGGTGGGAACCCCAAGTGTGACCCTCCACCACTGCTCTTATTGTTAGTCCTCTTTTTAATGTTGTCTAAGTTACACAataaatcacttttttttttccccttca

Function

GO:

id name namespace
GO:0019867 outer membrane cellular_component

KEGG:

id description
K07277 SAM50, TOB55, bamA; outer membrane protein insertion porin family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1491240 lncRNA downstream 42710 53528016 ~ 53536129 (-) True etnk1
TU1490636 lncRNA downstream 135844 53442454 ~ 53442995 (-) True G1306631
TU1490564 lncRNA downstream 308703 53269687 ~ 53270136 (-) True G1306564
TU1490554 lncRNA downstream 323117 53255498 ~ 53255722 (-) True G1306554
TU1490552 lncRNA downstream 330139 53248191 ~ 53248700 (-) True G1306552
TU1491288 lncRNA upstream 43294 53627633 ~ 53672203 (-) False G1307199
TU1491295 lncRNA upstream 59565 53643904 ~ 53644780 (-) True G1307204
TU1491289 lncRNA upstream 72822 53657161 ~ 53664288 (-) True G1307199
TU1491352 lncRNA upstream 160932 53745271 ~ 53755835 (-) False G1307250
TU1491348 lncRNA upstream 164005 53748344 ~ 53755835 (-) False G1307250
XM_036944604.1 mRNA downstream 2673 53555038 ~ 53576166 (-) True aldh1l2
XM_021563618.2 mRNA downstream 30608 53528221 ~ 53548231 (-) False etnk1
XM_021563598.2 mRNA downstream 469629 53085647 ~ 53109210 (-) False lrmp
XM_036944600.1 mRNA downstream 469629 53085647 ~ 53109210 (-) False lrmp
XM_021563599.2 mRNA downstream 469645 53085647 ~ 53109194 (-) False lrmp
XM_036945548.1 mRNA upstream 172140 53756479 ~ 53786697 (-) False efcab6
XM_036944615.1 mRNA upstream 204339 53788678 ~ 53817042 (-) True sult4a1
XM_036944637.1 mRNA upstream 707818 54292157 ~ 54302557 (-) False LOC110490327
XM_036944639.1 mRNA upstream 720669 54305008 ~ 54371524 (-) False LOC110490750
XM_036944638.1 mRNA upstream 720669 54305008 ~ 54371525 (-) True LOC110490750
TU1490123 other downstream 516559 53054849 ~ 53062280 (-) False G1306232
TU1490119 other downstream 516559 53060964 ~ 53062280 (-) False G1306232
TU1490121 other downstream 516559 53060964 ~ 53062280 (-) True G1306232
TU1490120 other downstream 522303 53054849 ~ 53056536 (-) False G1306232
TU1491355 other upstream 172176 53756515 ~ 53757348 (-) True efcab6
TU1491414 other upstream 314971 53899310 ~ 53922128 (-) True G1307309
TU1491599 other upstream 565705 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 1182633 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 1564436 55148775 ~ 55152111 (-) True LOC110490337

Expression Profile