RNA id: XM_021563627.2


Basic Information

Item Value
RNA id XM_021563627.2
length 4858
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110490313
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 53828138 ~ 53859559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATTCAGGAGGAGCCTGAAGCGCGGGTGGCTTGACTGGGTTTTGCGAGTCTCGGCTCTCTTGACCGCAGTGGACGATATAGACTACTCAAATCGGTTAATAAGAGTGTGGGGCGTGGCTCCACCTAAAATAAGACTCTGTCTCCTTATGCAGATTGGCCAGACCTGCCCTCTTCTAGAACCGGGTAGTTCAGCGCACCGGCGATTCACAGTAGATGACTCTCCGTCTCTTCGTACATTGCACAAGAGGAGTAAACTGGCTAGTGCTGTTGTTGACATTCAACCAACACTGAAGGGAACTTGTCAAAAAAGTTAACATTTTGGATTGATCATAACGAGCGCATTTACCCAAACTTGTAGGTCCTCGTTAAAGACTGTCCTCCCGGGATGTTCGACCTAACAAAGGAATGGAATCTGTCGTTCGCCGGCTGCGGGTTCCTGGGGATCTATCACATTGGAGTGGCCAGCTGCCTGTTGGAACAAGCGCCCTACCTCATCAAAGGTGCCACCAAGATTTACGGGGCTTCCGCTGGTTCCCTCTCCGCCTCGATGCTCGCCAGCCAGGCATCCATAGCTAAGTGCTGTGAGGATGTGATCGAGACAGTCAAGGAGGCCCGGAAGCGTAACCTgggtcccctccacccctccttcaacCCGGTCAAGATCATCAGGTCGGGCCTGGAGCGTGACCTGCCCGCCGACGCGCACACACTCGCCTCCGGGAGGCTGTGTGTGTCACTCACTCGCGTGTCTGATGGACAAAACGTCATCGTGTCCGAGTTCAAGTCCAAGGAGGAGCTCATCCAGGCACTGCTGTGTAGCTGTTTCATCCCCATATACTGTGGCctgatccctccatccttccaagGAGTGcGTTACGTGGATGGGGGAATAAGTGACAACCTTCCTCAGTCggagctgaagaacaccatcagcATCTCTCCGTTTTCGGGCGAAAGTGACATCTGTCCACGGGACACCTCCTTCAACTTCCACGAGCTTCGTCTCACCAATACCTCCATCCGGTTGAACCTGAGCAACATGTACCGCCTCAGCAAGGCCCTGTTCCCCCCAGAACCCAAGGTCATGGCAGAGATATGTCAGAGTGGCTACAAGGACGCCCTTCGCTTTCTTGAGGAGAACCACCTGCTGAAGCTGGAGTGTCCGACTGCCGGCCCCAACCCCAACCTATCAGAAGCCGCCTGCTGCAAGCCCATCGCCATGGAAACAACAAAGAACTGGATGTTCTGGCGGCTCCGCCTCCTGAGGAAGCAACACTGGTGGTTGGATGAGCAGATTGTTGACAACCTGCCAACCCAAATCAAAAAAGTGTTTTGTGAAGCGTGCCAGCAGAAGCCTGGTCTGTATGCTCAGGTGTCTGAGATGCTGCCGGTCAGAGTGGCCTCCTACATGCTCCTGCCCTGCACACTACCTGTggtatcagcctactcagtgGGCAAGAGgTTTGTGGAGTGGATCCCAGAGGTGCCTGCAGATATGCGTTGGCTAGCTGGGGTGGCTGGGGATGTGGCTGGGAGCATGTACAGACAGACCCGGAGAGGAGCACCAGCAGACATAACCAGTGATGGTTCCCTGAGGAATTGCATGAGTCTGCCCCTACCCCTGGACAGTGACGGACCCAGGGAGAGAAACAGTCATCTCTCCGGGTTCGCTCGTTCTGTTCTCAACTTCCAAAGCCAATACTGGAACATCCCCAGCCCCCACACGCCCAGCTCCTCCCCACGACAGATCTGCTTCAGTGTTCATTTTGGCACTCTTTTTTAGATTCATTCTAGTCTGGCATTTTGACTAAAATATCATTAAATCTTAGTCACATTTTTATGATTTGAATAATGATTTAGTCATTGTTAAAATGACAAAAACAGCCATTTTAGTCAACTGAACGCACTTTAATTTGAGTCATATTTTAGTCACATCACATTTGTATTGCCTCATTAGCCACAAACCACATTTCCATCCAGAGTTTTTATGGGAGTAAAGTCAAATCAAAGATttgtataactaacccaagatggaCCATAACTACTGAGATGGTCGGCTATTCAAGAAATAAGCTGTTCTATCTAACGTCCAAGCAGGAAAGCATGATTCCAGATACAGTATTTTGATGTGCAACCTAATCCAAAAATGGTCATGAATTGTGAGTTGGTATATTTTACTGTTAAAATAGGGCTCTAGAATTTTCTGATATTTTTTGTTCAATAGAGATGAATTTGCCTATATCGTTGTGTGCACGCTTATCATAGGCAGATTTATTTGGGGGCTTATACACCACATGAAAAAGTGAGAACTCAAAACACATTAGCTAGATCACTAATACTAAATATAATACCCACTGCTAGTAGCCATGTATTCATctaaaagtaaatgtaatgtccttTTTTTGTTGCAGTTGTAGCCCTGCTACCCTATGCACTCGCAATAGCGCATTTCGCAGGCTTCGTATCTTAAAGCCATATCTAATATTTTGATTATAAAATAGTTGCTATTTATTTTATTcaaggcaagtccgttaagaacaaattcttatttacaatgacggcctacaccggccaaacccagatgaccaattgtgcgccgccccagcTCCCACACGCCCAGGACTTCCAATCACTGCTAGTCGTGATACAGCCTGggtttgaaccagggtgtctgtagtgatgcttcatccactgagatgtagtgccttagaccgctgtgccactcaggagctcAGTTGAGCTGAAAATTATGGAAATGACAAATATAAAGTATACCCACAGAAAGCTGAGCACATTAGTTGCTTGTAAAGCTATGTATTTCCTGCAATTGGATTTTGAAATGTTATATTGAAATGCTATACAATCAAGaagccttttttctctctcccggaGTGCACACTGTGGCTTGCTCATCACAGCAGCAGGCTCCAACGGAACAAGCCAAGGGATTGGGCAGACACTTTCATtgcaggaatcatgaggataatgCACTTTACTGTTTGACCAAAAAAATGGgacttttttaaaaattattttttaaaacttttgagTGAGGTGAACATGTCATGAATGTTCAGCTCGCACGGCACCCAATACAAATTTAACTCGCACAGCCAAGTCAAAGGGTTGCAAAACGCCATTAAATGGTTTCAGTCTAGAGCCTTGCCCCTTGACATACTGTAGCTATATTGTAATCAAAGTTGTGTCATaagtagtggtctgatactgtaGGTTGCAGCAAACCACAAGCTAGCACTATCAATCAGTTATTAACCTATTTGAGCGACAAAggagactggtgggaggagctataggaggatgggcatTTTTGTAATGTCTGAAAAGGAATaaatggaacatatcaaacatatggaagccACATGTACCAGCTAAAGTTCCCTCCCACTGGGCCTGTCTATAGTGTATAGGAACTGAAAGGTGGATTCGGATAGGCAAAAAATGGTCATGTGATCGAATAGCTTTGGGATCCAGAACTGTTAGACACACTATTGACTCAATCATGTCTTTtgatcactccaccaatcattttttattctacagtacacatTGTAAAACATTTAACCAGCTCACCACCTCTGCCAGTGAATTATTGTTTGGATATGCACATTTTATAAATCACTGTCTAGTTTTACCAGATAACGTGTTATCACTACCTACTTACCTACAGTACCTACATGCCTACAGTACCTAACTACCTGTGTTCAGTCAAATGTAGCATTCATGCCTCCTTCCTAATGGACTGTTGACCTGAGTTGACGTTGACTTCCTTGACTAAGAGCTGTGTGTTTTCCTGACTACTATTAGACAGGACCCTTGAACAGAACTATGAACTACTGTGATGTCAAGAAATTTGAATCACAATATCTCTCAATGTTGACCATTGCTTTTGAACAATAACTTTAGGTGCATAGGATTCACAATTTTAATGGCATGATCAAATGTCAAATTTAAGTTCCCACACTGCCCCATTTATAGTAGGGTACATACTGTACTTGTATTTATAACGTGTGTAACACTGTGAAAACCTCTACCTACTTGTCCCTAAGATGCCAGGTGGTTAAGATGTCCCGAAgatggcctagtggttagtggtATATTTCTTAAATATACTTTACTGTTGTTATTTCACATTAAGAACCTTATCTtaataacataaaacacaacaacggTTTTTATGATGTGACCTTTTGTGTTTAAATATACTGTAAGTATTAAAATCCTATTTTGGTGCCTCATCATTATGGAAACTGTGCAGAATAGGTAGGGGAGAGTGGGATAAGTTGAACCAAAGCGGTAAATTGAGCTTTGTTTATACACAAAAATccataatttgaccaaatatttaggaagagtcCATAATTGCATGGAGtttgaaggaagaaaccacatggaaaaagtgttaagcaagttaggtaaaaaaaaaataatgtttaccACGTCAAATTAATTTGTGTtcgaggtttcatgatgcttgtatctaaaccccAACAGTTGGGGTCTCAATAACCTTCAATATGAgatcctaaacctagcatgaaagtgcatccttgtatctgtgtgggctaatatagtgaagatgtttgccttggggtaaattgagccaatgaccatggggtaagttgagacaaTGGTTAAGCCAATTGCAAGTTGAGCAAATGTAAGTGTTTTCTTCCTAGGCTTAAACAGGGTCTGGCCTatgttaaaaatgtttttaaaagtacaaagtgtttgttaggcattaagcctgtgttaaaatatGCTTAAAATGATACAAATATATATTGTGATTGTACTGAATTGTGTTTGCGAAATAAAGATAGATATGGTTTTAtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1490782 lncRNA upstream 117866 53675309 ~ 53710289 (+) True G1306755
TU1490747 lncRNA upstream 122718 53698747 ~ 53705437 (+) True scube1
TU1490749 lncRNA upstream 198751 53589734 ~ 53629404 (+) True G1306723
TU1490727 lncRNA upstream 244803 53582548 ~ 53583352 (+) True G1306708
TU1490279 lncRNA upstream 460810 53352462 ~ 53367345 (+) False sox5
TU1490897 lncRNA downstream 70246 53929805 ~ 53930980 (+) False G1306852
TU1490898 lncRNA downstream 70246 53929805 ~ 53930567 (+) True G1306852
TU1490886 lncRNA downstream 215958 54075517 ~ 54077861 (+) True G1306844
TU1490947 lncRNA downstream 233163 54092722 ~ 54140427 (+) True G1306899
TU1490951 lncRNA downstream 236412 54095971 ~ 54096529 (+) True LOC118938924
XM_036944614.1 mRNA upstream 72300 53706468 ~ 53755855 (+) False mpped1
XR_005036128.1 mRNA upstream 72300 53706468 ~ 53755855 (+) True mpped1
XM_036944612.1 mRNA upstream 122695 53585060 ~ 53705460 (+) False scube1
XM_021563628.2 mRNA downstream 16352 53875911 ~ 53890829 (+) False LOC110490314
XM_036944628.1 mRNA downstream 50089 53909648 ~ 53940015 (+) False ttll12
XM_036944629.1 mRNA downstream 50089 53909648 ~ 53959246 (+) False ttll12
XM_036944632.1 mRNA downstream 50342 53909901 ~ 53940015 (+) False ttll12
XM_036944631.1 mRNA downstream 51255 53910814 ~ 53940015 (+) True ttll12
TU1490729 other upstream 244803 53580541 ~ 53583352 (+) False G1306708
TU1490277 other upstream 452743 53352617 ~ 53375412 (+) False sox5
TU1489077 other upstream 1315105 52512629 ~ 52513050 (+) True G1305302
TU1488634 other upstream 1913145 51914597 ~ 51915010 (+) True G1304886
TU1487716 other upstream 2181615 51587193 ~ 51646540 (+) False G1304083
TU1490737 other downstream 29669 53889228 ~ 53890391 (+) True LOC110490314
TU1492368 other downstream 1298447 55158006 ~ 55167163 (+) False LOC110490339
TU1492428 other downstream 1403399 55262958 ~ 55266276 (+) False G1308238
TU1492492 other downstream 1488477 55348036 ~ 55349205 (+) True G1308299
TU1492670 other downstream 1710459 55570018 ~ 55583855 (+) False LOC110490357

Expression Profile