RNA id: XM_036944637.1


Basic Information

Item Value
RNA id XM_036944637.1
length 3195
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110490327
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54292157 ~ 54302557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGAGCCTGGGAGCGCGCTTTTCAGAGACGCTCTGTGTGGGTTCTCCCAGTCCAGGATAAAACTGTTTGTCTGCGTTTTGGGGAACACCGTCGGGAACTTATTTTATCACCCATCCAACTGTAGGCTACTAGCCGCAGAGCCACATGATTAtaatcaccatctctctctccccgtggATGTTTTTTTTACTGAATTGCTCGAGATTACCACGGATTGAGGATTATTTCTGTTAGGGTCCTATGCTGTGGGGCTAGCATGAGACAGAGCCCAGCACCGATCCAGCGCTCCATGGACATACCCTTCCCCAGTGCCCGGGAGGCCAGTCATCTTCTGTAAATGAGGTGGCCATGGAGAGAAGAAGCGGCTGTGGAGTACATCAGATCTGCTTTCTGTTTCTCTTACTGTTTTCACTGTATCCTGTCTGCTGTCGAGCCAGTTGGATGTGGTTGGGAATAACCTCCGTGGGAGTACCAGAGAAGCTGGGCTGCGCCAATCTCCCGCTGACGCACAAGCAGAAGGACCTGTGCAAGAGAAAGCCCCATCTCCTGCCAAGCATCAAGGACGGCGCGCGCATCGGCATCGCGGAGTGCCAGACGCAGTTCGAGCACGAGCGTTGGAACTGTTCTACAGCCAAAGAGCTCTCTGTGTTCGGCTACGAGCTAACCAGTGGGACCAAGGAGACGGCGTTTATCCACGCGGTGATGGCGGCTGGGCTGGTCCAGGCAGTGACGCGCTCCTGCAGTGCGGGCAATATGACAGAGTGCGGCTGTGACACCAGCCTGCAGGGCACAGGCTCGCCCAGCGAAGGGTGGCACTGGGGCGGCTGCTCAGACCATATCCAGTACGGTACATGGTTCAGCAGGAAGTTCATAGATAATTCAGTGAAGAATATGTCCTCAGCCAGGGGAGGGGATGCACTGCTCACCATGAACCAGCACAACAGTGAAGCCGGGAGACAGGCTGTCGCCAAGACGATGGCCACCGACTGCCGTTGCCACGGCGTGTCGGGCTCGTGTGCCGTCAAGACGTGCTGGCGCACCATGGCATCGTTCGAGCGCGTGGGCAACTTCCTGAAGGAGCGCTATGAGGGAAGCGTTCAGGTGCTGGACCGTTCCAAGAGGAaggtgaggaggaaggagaaggaccAGCGTCACGTGCCCATCGGGAAGGAAGAACTTATCTTCCTCAACAAGTCTCCTAACTACTGTCTGGAGGACCGGCGCTGGGGCGTGGCGGGCACTAGAGGGCGCCGGTGTAACCGCACCTCGGCCGGCCCCGACGGGTGTAACCTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACGTGTAAAtagggagggggaggcaggtgatggcacacacaaacacactcacactgtcCCCAATGAGAGACTAAAAGACTCCCCCCACCATTCCTCTCTCCCATGGACAGGGAAGACGGTATTTATACACCACACCATCAGAGGTGGACAAAGACAGTGGAAAATAGTTGACTTTGATTGGCCTATCAGGGCCCAGCCTTGTAGGAGGCAATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGCTTGAGGATCCACACACTCTGACTACCAAACATGGCCATCTTCATGATTTACTCAAGAGTAGAAATGAGCCACAAAACTCAATGATATAAACAAACCGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCGGTGAATGATGTGTAAGAGGAGAACAAAGGGACCAAAAAGTGCCTGTAGGGGGGCGGCAACCCAGTCCTGCTAGGCCGCAACAGTGTCATTACATTTCCAGAACAGAACGAAGTCTCATATAGACAACTGCAGGCTAGAGCTATAGGCAGTACAGGGATTGGGAAACCGTCAGAGGTTGCCAACTTTTGTGTCATTTCTGGGGCTCTCTTACAGGCTAGGGAGTAAGGACAGACCCATGGCTTTATGGTGATTGATGGTGGATAGGTTAGACTTATTCTTGTTGGAAAGCTTGCAGTATCAATGCATAGAAATAAGTCTTGAAATAATCATTCAAATGCTTTGTATTTTTGGAATAAACTGCTGATGACTTCAAAAATAGATGGTACCATGACATTTTTATTTGAGATATTTTGGAAAGGTTTCTTGAAATCTACAATATTAGTTTTTTTTACTATTCAGATTGCACAAGTCAGGGCAGGGTAAAGCGCCGGGGGCTTTGACTGAGAATATGTCAGATGACGTAATATGTTTTGTAAATGGTTTACATTTTGTAAATATTAAAGGATGCTGCGTCACACGATGAGTGTCTTAAGATTCAAGCCCATCCAATGCTCTCAGACATACAGCATGTGTTTGTCAAGCTGTACCACTTAATGTGTTGCTTTTCTGTTTGCCATCATTGTATTACCAAGGTCCTTTGTTATCCTTTTGCTGTCCGATCAACTTTTTCTCTATCCCGTGTTTGTGTTTGGATCCGAAACCAGCTATAAATGAAGGAATGCCTCAATGGAACGGAGCAGTTTGTTCTCAGTAGACCCACTGGCAGCAGGACCGTGGAGATGCTTGAGTTGGTTTCGGAGCATTCCTCTTGCTGTCTCTAAGAATTTAAGCCTAttccgtctcttcctctctctcctttcgttTCCCCTCTCAGTCTCTTCCCAGTTTCAGTCTCTCTATTCCTTtacctctgtctacctctctctctctcgctttcattctccctctcttgttctctctctctctctcctgactgagAGGCTGTGCTATGTGAGAAGTGACGATGCTATGCTAAATACCGCGAGTGCTTTCTCTTAAAGAGCCTTTAAAAGTCTAACGATACTGACCCTTAAATTTCCCTGAAGCGTCCAGCACTATGACTTgttggtgagaggagagggggggaaacCCAGACCTAAAGGAAGTGGGACGAGATGGAGGAGAGCAGTTGACGTGAGCCCGAAGCGCTCTGACCTCGAGGCTTTTCAGTCATGTTTTTGTTTTGAGGACTGCTTTCAGGAATCAGGTGCTCCAGTTACAAAATAAATGGAGGATTACGTCTTACAACTCGCTGTCCTTTTTCAGTTAAATTAGTCCATAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1491657 lncRNA downstream 30563 54261082 ~ 54261594 (-) True G1307531
TU1491620 lncRNA downstream 54443 54189976 ~ 54237714 (-) True G1307494
TU1491619 lncRNA downstream 102260 54189428 ~ 54189897 (-) True G1307493
TU1491600 lncRNA downstream 139515 54152406 ~ 54152642 (-) True G1307474
TU1491598 lncRNA downstream 142487 54149373 ~ 54149670 (-) True G1307472
TU1491730 lncRNA upstream 96726 54399283 ~ 54400080 (-) True G1307599
TU1491724 lncRNA upstream 102801 54405358 ~ 54406680 (-) True G1307593
TU1491725 lncRNA upstream 109305 54411862 ~ 54413122 (-) True LOC110490332
TU1491758 lncRNA upstream 204494 54507051 ~ 54515880 (-) True G1307626
TU1491757 lncRNA upstream 211251 54513808 ~ 54518006 (-) True G1307625
XM_036944615.1 mRNA downstream 475115 53788678 ~ 53817042 (-) True sult4a1
XM_036945548.1 mRNA downstream 505460 53756479 ~ 53786697 (-) False efcab6
XM_021563620.2 mRNA downstream 707818 53578839 ~ 53584339 (-) True LOC110490308
XM_036944604.1 mRNA downstream 715991 53555038 ~ 53576166 (-) True aldh1l2
XM_021563618.2 mRNA downstream 743926 53528221 ~ 53548231 (-) False etnk1
XM_036944639.1 mRNA upstream 2451 54305008 ~ 54371524 (-) False LOC110490750
XM_036944638.1 mRNA upstream 2451 54305008 ~ 54371525 (-) True LOC110490750
XM_021563654.2 mRNA upstream 72068 54374625 ~ 54380846 (-) True LOC110490329
XM_036944642.1 mRNA upstream 108746 54411303 ~ 54419096 (-) False LOC110490332
XM_021563659.2 mRNA upstream 295069 54597626 ~ 54599878 (-) True LOC110490331
TU1491599 other downstream 141617 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 370029 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 534809 53756515 ~ 53757348 (-) True efcab6
TU1490123 other downstream 1229877 53054849 ~ 53062280 (-) False G1306232
TU1490119 other downstream 1229877 53060964 ~ 53062280 (-) False G1306232
TU1492053 other upstream 464415 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 846218 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 1115766 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 1253675 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 1443728 55746285 ~ 55747753 (-) True G1308906

Expression Profile