RNA id: TU1491677


Basic Information

Item Value
RNA id TU1491677
length 550
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC110490327
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54292157 ~ 54302557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACGTGTAAAtagggagggggaggcaggtgatggcacacacaaacacactcacactgtcCCCAATGAGAGACTAAAAGACTCCCCCCACCATTCCTCTCTCCCATGGACAGGGAAGACGGTATTTATACACCACACCATCAGAGGTGGACAAAGACAGTGGAAAATAGTTGACTTTGATTGGCCTATCAGGGCCCAGCCTTGTAGGAGGCAATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGCTTGAGGATCCACACACTCTGACTACCAAACATGGCCATCTTCATGATTTACTCAAGAGTAGAAATGAGCCACAAAACTCAATGATATAAACAAACCGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCGGTGAATGATGTGTAAGAGGAGAACAAAGGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1491657 lncRNA downstream 31916 54261082 ~ 54261594 (-) True G1307531
TU1491620 lncRNA downstream 55796 54189976 ~ 54237714 (-) True G1307494
TU1491619 lncRNA downstream 103613 54189428 ~ 54189897 (-) True G1307493
TU1491600 lncRNA downstream 140868 54152406 ~ 54152642 (-) True G1307474
TU1491598 lncRNA downstream 143840 54149373 ~ 54149670 (-) True G1307472
TU1491678 lncRNA upstream 4581 54298640 ~ 54298790 (-) True LOC110490327
TU1491730 lncRNA upstream 105224 54399283 ~ 54400080 (-) True G1307599
TU1491724 lncRNA upstream 111299 54405358 ~ 54406680 (-) True G1307593
TU1491725 lncRNA upstream 117803 54411862 ~ 54413122 (-) True LOC110490332
TU1491758 lncRNA upstream 212992 54507051 ~ 54515880 (-) True G1307626
XM_036944615.1 mRNA downstream 476468 53788678 ~ 53817042 (-) True sult4a1
XM_036945548.1 mRNA downstream 506813 53756479 ~ 53786697 (-) False efcab6
XM_021563620.2 mRNA downstream 709171 53578839 ~ 53584339 (-) True LOC110490308
XM_036944604.1 mRNA downstream 717344 53555038 ~ 53576166 (-) True aldh1l2
XM_021563618.2 mRNA downstream 745279 53528221 ~ 53548231 (-) False etnk1
XM_036944639.1 mRNA upstream 10949 54305008 ~ 54371524 (-) False LOC110490750
XM_036944638.1 mRNA upstream 10949 54305008 ~ 54371525 (-) True LOC110490750
XM_021563654.2 mRNA upstream 80566 54374625 ~ 54380846 (-) True LOC110490329
XM_036944642.1 mRNA upstream 117244 54411303 ~ 54419096 (-) False LOC110490332
XM_021563659.2 mRNA upstream 303567 54597626 ~ 54599878 (-) True LOC110490331
TU1491599 other downstream 142970 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 371382 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 536162 53756515 ~ 53757348 (-) True efcab6
TU1490119 other downstream 1231230 53060964 ~ 53062280 (-) False G1306232
TU1492053 other upstream 472913 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 854716 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 1124264 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 1262173 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 1452226 55746285 ~ 55747753 (-) True G1308906

Expression Profile