RNA id: XM_036944643.1


Basic Information

Item Value
RNA id XM_036944643.1
length 9760
RNA type mRNA
GC content 0.55
exon number 48
gene id LOC110490751
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54879640 ~ 54964148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCTGACGCGAGCTTCAGGGGTGCCAAGCTTTTTAAAACCCTGTCCTGCCTAGAGCTTCATTTAGCTACTCAAGTGTAACCGACTTCACCAAGCAGGCTGTCGCCGCCGACTTGGTAGGGCTACTAGCGGTCCCGTGCTGTCCATTGTACAGACAACGCGTTCATCTTTCTACAGTCTATTCTTCTTCCGTGCCAAGGTGTCTATTAGGATGCAGCTACCACTTTTTTCACTATTCTGATACATAAAAAATCAGGGAACCGTCCACGTTGGAAACGATAAACGGATTAAACGGACAAGCTCCACTCCAATCACAAGTACAAACGAACATCTCACTTACTCTTTCTTTCATATTTTTCCTagttttacaacttttttcacggCCAGTGCGCAAGCTTGGCACTGGCGCACAagaaacatttttttacatttatttccaCGCTCCCTTGCGTGCCGTAACGTTCACACACTGGCCCCACTGATTGTGGTATAAAAAAGGGCACGGAAACCGACAACATGATGAGCAATAATACTTACTACGAGCAGCAGCAGCCGCCGCAGTACTACCAGAGTACGGACAACGGGGACGACGAAGAAGAGGAGATGCCGGCTACGGAGAAAGACCTCGCTGAGGATGCGCCCTGGAAGAAAATCCAACAGAACACCTTCACCAGGTGGTGTAACGAGCACCTCAAGTGCCTCAACAAGCGGATCAACGACCTACAGAAAGACCTGACCGACGGGCTCAAGCTCATCGGTCTCCTGGAGGTTTTGAGCCAGAAGAAAATGTACAGAAAGTACCACGCCAGACCTAACTTCAGACAGATGAAACTGGAAAATGTGTCCGTCGCGCTGGAATTCTTGGAGAGAGAACACATAAAGCTGGTATCGATAGACAGTAAGGCCATCGTGGATGGGAACCTGAAGCTTATCCTGGGTCTGATCTGGACTCTGATCCTGCACTACTCCATCTCAATGCCCATGTGGGAGGACGAGGACGATGAGGACGCCAAGAAGCTGACCCCCAAGCAGAGGCTGCTGGGATGGATCCAGAACAAGGTGCCCCAGCTGCCCATCAACAACTTTCACCGTGACTGGAGGGATGGCAAGGCTCTGGGAGCCCTGGTTGACAACTGTGCCCCAGGCCTGTGTCCTGACTGGGAGACGTGGGATCCTAGCCAGCCTGTGGAGAATGCCAGGGAGGCAATGCAGCAGGCTGACGACTGGCTCGGTGTGCCCCAGgTGATAGCCCCTGAGGAAATAGTGGATCCCAATGTGGACGAGCACTCGGTGATGACCTATCTGTCCCAGTTTCCCAAATCCAAGCTGAAGCCTGGCGCCCCGCTGCGCTCCAAGACTCTGCACCCTAAGAAGGCCAAGGCCTACGgaccagGTATTGATCCCAGAGGTAACATGGTGCTGAAGCCGGCTGAGTTCATCGTGGAGACAGTGGAGGCGGGGCTAGGGGAGGTGCTGGTCTATGTGGAGGACTCAGAAGGACACACAGAGGAGGCCAGAGTGATCCCCAACAATGACAAGAACAGGACGTACTCTGTCATCTACCTGCCCAAAGTGGAGGGCCTTCACAAGGTGAAGGTGATGTTCGCTGGGCAGGACATAGACAGGAGTCCCTTCGTGGTGAGTGTGTCCAAGGCCATGGGAGACCCCAACAAGGTGCAGGCCAGAGGACCAGGACTGGAGCCTGTAGGCAACGTGGCTAACAAGCCTACCTACTTCGACATCTACACAGCAGGTGCCGGTGCTGGAGACGTGGGTGTGATCATTGTGGACTCCCAGGGCAGAAGAGACACCGTGGAGATCATTCTGGAAAACAAGGGGGACAGTATTTTCCGTTGTACCTATTGCCCTATCCTGAAGGGGCCTCACGTTATCTACGTGACGTTTGCTGGGCAGCAGATACCCAGAAGCCCTTTCACTGTCCACATCTCAgaggCTCCACCGAGCGCCCTGCCCCCTGGCTCTCCGGTGCAGATAGTGCCCCAGTCCATACGCACCCCACCCACAGACAAGGCCAAGAGAGTGCCCCCCCCAACACCGCCCAAACCCAGGCGACCAACCAGCAACCCCAACATGTGCCGGGCCTCAGGGAGAGGTCTCCAGCCTAAGGGGGTGAGGGTGAAAGAGGTGGCCGACTTCAAGGTGTACACCAAGGGAGCCGGCAGCGGAGAGCTCAAGGTCACCGTCAAGGGGCCAAAGGGACTAGAGGAGCCTGTGAAGGTGCGTGACGCGGGAGACGGGGTGTATGAGTGTGACTACTACCCCATCATGACTGGCAAatacaccatcaccatcacctggGGCGGACAGACCATCCCACGCAGCCCGTTTGAGGTGGGGGTGAGTGAGGACGTGGGGTCCCAGAAGGTGAGGGCGTGGGGGCCGGGCCTGGAGACAGGCATGGTGGGGAAGTCAGCTGACTTTGTGGTGGAGGCCATCGGCACAGAGGTGGGAACTCTGGGTTTCTCCATCGAGGGCCCGTCGCAGGCTAAGATAGAGTGTGATGATAAGGGCGATGGGTCATGTGACGTACGTTACTGGCCCACGGAGCCTGGCGACTACGCTGTTCACGTCATCTGTGACGACGAGGACATCAAGGACAGCCCCTTTATGGCCCACATCCTCCTCACAGCCAATGACGTGTTCCCTGAGAAGGTGAAGAGCTACGGCCCAGGTCTGGAACCGATTGGCTGCATTGTCAACAAACCAGCAGAGTTCACCATTGATGCAAGTGGAGCCGGCAGGGGCCAGCTGAAGATATACGCCCAGGATGCAGAGGGCTTCCCCATAGACATCCAGATCACAGAGAACGGAGACAGCACCTTCCTCTGTGTCTACATTCCCACCAAGCCCATCAAACACACCATCATTATCACCTGGGGAGAGGTCAACGTCCCCAACAGTCCCTTCAGGgtgaCCATCGGAGAGGGCAGCCACCCAGAGAATGTGAAGGTGTATGGTCCAGGTGTGGAGAAGTCAGGTCTGAAGGCCAACGAGCCCACCTACTTCACTGTGGACTGTAGCGAGGCAGGTCAAGGGGATGTCAGTATCGGCATAAAGTGTGCACCCGGCGTGGTTGGTCCGGCAGAGGCAGACATTGACTTTGACATCATCAAGAACGACAACGACACGTTCACAGTGAAGTACATGCCCCCTGGCCCCGGACGCTACACCATCATGGTGCTGTTCGCTGACcacGAAATACCCATCAGCCCTTTCAGGATCAAGGTGGACCCTTCCCATGACGCTAACAAGGTGAGGGCGGAGGGACCCGGACTCAACAAGACAGGAGTGGAAGTAGGTAAGCCCACCCACTTCACCATCTACACCAAGGGAGCGGGCAAGGCCAAGCCTGAAGTGCACTTCACCGGAGCAGCCAAAGGGGACGCCGTTCGAGACTTTGAGATCATTGACAACCATGACTATTCCTACACCGTGCGCTACACTGCAGTGCAACAGggtaaCATGTCTATCTCAATCTGCCATGGCGGTGACCCCATTCCCAAGAGCCCCTTCAACATCACTGTGGCTCCGCCCCTTGACCTCAACAAGGTCAAAGTTCAGGGGTTGAACAACAAGGTTGACGTTGGGAAGGATCAGGAGTTCACAGTGAGCACGCATGGCGCCGGTGGCCAGGGCAAGTTGGATGTGAAGATCACCTCGCCCTCTCGTCGGCCAATCCCCTGCAAGCTGGAGTCTGACACGGCCAACGAAGTGCACACTGTGAAGTACATTCCCCCTGAGGAGGGACCCTACAAATTGGACATTAGCTATGATGGGAACCCTGTGCCTGGGAGCCCCTTCACTGTGGAGGGGGTGATGCCCCCTGACCCCTCAAAGGTGCGTGCCTATGGCCCAGGTCTCCAGGGGGGCATGGTGGGCAAGGCGGCCCCCTTCGCCATTGACACCAAGGGTGCGGGCACTGGCGGGCTGGGCCTGACCGTGGAGGGACCATGTGAGGCCAAGATCGAGTGCCAGGACAACGGCGATGGCTCCTGCTCTGTCTCCTACCTGCCCACAGAGCCCGGCGAATACGCCATCAACATCCTGTTTGCCGAGCAGCACATCCCCGGCTCCCCCTTCAAGGCCATGGTACAGTCTGTGTTTGACCCCAGTAAGGTCACAGCAAGTGGGCCAGgcttggagagagggaaggtCAACGAGGCAGGGTCGTTTGTAGTGGACTGCTCCAAGGCTGGGGAGGCCGAGCTGACCATTGAGATTATTTCCGATTCGGGGTCGAAGGTGGAGGTGCGTGTTCAGAACAACAGTGATGGGACCTATTCTATCACATACATCCCACAGTTCCATGGCATGTATACTATCACCATTAAATACGGGGGGCATGCCGTGCCCAAGTTCCCCGCCCGGGTGCAGGTGGACCCAGCCGTGGATACCAGCGGGGTGAAGGTGTACGGACCAGGAGTGGAACCCAGAGGGGTCCTGAGGGAGGTGACCACCCATTTCATCGTGGATGCCCGTGCCAAGAGCAAGACCGGGGGCAGCCATGTCAAGGCCCGCATCGTCAACCCTTCAGGCGCCAACACAGACGCCTACATCACTGACAAGGGAGAAGGCACCTACAGAGTGGAATACGCTGCCTATGAGGATGGGATGCACCTGATAGAGGTGCTGTATGATGATGTGGCGGTGCCTAACAGTCCGTTCCGTGTCCCGGTAACGGAGGGTTGTGACCCAAGCCGTGTCAGAGCCTACGGCCCTGGTCTGGAGGAGGGCCTGGTCAACAAACCCAACCGCTTCACCGTGGAAACCAGgGGTGCTGGTACAGGGGGTCTGGGCCTGGCCATCGAGGGTCCGTCAGAAGCTAAGATGTCCTGTAAGGACAATAAAGATGGCAGCTGCAGTGTGGAGTACATCCCCTTCACCCCGGGAGACTATGATGTCAACATTACCTTCGGAGGCTTGCCCATCCCAGggagtCCCTTCCGTGTGCCAGTGAGAGAGCTGGTGGACCCAAGTAAGGTGAGGTGTTCAGGCCCAGGGCTGGGTAGTGGAGTCAGAGCCCGTGTTCCTCAGACCTTCACCGTGGACACCAGCAAAGCTGGCCTCGCCCCTCTGGGAGTGGTGCTGTACGGACctactgGAGTGGCTGAGCCAGTGAACATCACGGATAACGGAGACGGAACACACACAGCGACCTACACCCCGGCCAAGGACGGCCCGTACACCGTGTGTGTGAAGTACGCTGACCAGGAGGTTCCTCGCAGTCCGTATAAGATCAAGACATTGCCTGCCCATGATGCCAGTAAGGTGCGTGCCAGTGGGCCAGGTTTGAATGCCCAGGGTGTGCCTGCCAGCCTGCCCGTGGAGTTCACCATCGATGCCCGCGATGCTGGCGAAGGCCTGCTCACTGTGCAGATACTGGACCCAGAAGGCAAGCCGAAAAAGGCCAACATCCGTGACAACAGAGATGGGACGTACACAGTGTCCTATGTACCAGACATGGCAGGGCGCTACACCATCACCATCAAGTATGGAGGAGATGAGATTCCCTACTCACCCTATCGTATCCATGCCCTGCCCACTGGAGACGCCAGCAAGTGTCTGGTCACAGTTTCCATTGGAGGACATGGATTGGGTTCAGGCCTCGGACCCACCATCCAGATCGGCGAGGAGACCGTCATCACCGTGGACGCAAAAGCTGCTGGGAAGGGGAAGGTGACCTGTAAGGTGTCGACGCCAGATGGGGCCGAGCTAGACGTGGACGTGGTGGAGAATTCCGACGGAACGTTTGACATCTATTACACGGCTCCGGAACCTGGGAAATACGTCATCACCATCCGCTTTGGAGGAGAACACATTCCAAACAGCCCCTTCCACGTGGTGGCCAGTGATACCGTCCCTATAATAGAGGAACCGTGTGACAAGCTCCAGTTACAACAGCCCTACCAGGCCTACCAGGGCTACCCCCCTCACTGGGCCACAGAGGAGCCAGTCACCACCGGCGATATCATGGAGCCTATGCTCCGCCCCTTCAACCTGGTCATTCCGTTCACCGTTCAGAAGGGAGAGATCACAGgtgaGGTACGTATGCCCTCAGGTAAGACAGCCCGTCCTAACATCACAGACAACAAGGATGGGACAGTCACAGTGAAGTACGCCCCTACAGAGAAAGGCCTGCACGAGATGGACATCAAATATGATGGAAACCACATCCCAGGAAGTCCCCTCCAGTTCTATGTAGATGCCATCAATAGTGGTCATGTGACAGCCTATGGTCCTGGTCTGAGTCACGGCATGGTCAACAAACCTGCCACCTTCACCATCGTCACCAAGGATGCAGGGGAAGGTGGTCTGTCCCTGGCGGTGGAGGGTCCCTCTAAGGCAGAGATCAACTGTAAGGACAACAAGGATGGAACCTGTACTGTGTCCTACCTTCCCACTGTGCCAGGAGACTACAACATCATCGTCAAGTTTGACAACAAACACATCGCCGGCAGCCCCTACACTGCCAAGATCACAGGAGATGACACTATGAGGACATCCCAGCTCAATGTTGGCACGGCAACAGACGTGTCATTGAAGATCTCAGAGACAGACTTGACCAGCCTGACAGCGAGCATCAGAGCACCGTCGGGCAACGAGGAACCCTGCCTGCTCAAGAGACTGCCCAATCGACACATCGGTATCTCATTTACTCCTAAGGAGGTAGGGGAGCATGTTGTGAGTGTGAAGAAGAATGGGACGCACGTGACCAACAGCCCCTTCAAGATCATGGTGGGTCAGTCAGAGATCGGGGACGCCAGCAAGGTCAAAGTGTTTGGCCAGGGACTGGTGGAGGGACACATCTTTGAGGTGGCTGAGTTCATAGTTGACACCAGGAACGCAGGTTATGGTGGTCTGGGTCTGTCTATCGAGGGTCCCAGTAAGGTGGATATTAACTGTGAGGATGTGGAGGATGGTACCTGTAAGGTGACCTACTGTCCCACTGAACCAGGAAATTACATCATCAACATCAAGTTCGCCGACCAGCACATTCCAGGAAGTCCTTTCACAGTGAAGGTGTGTGGTGAGGGCAGGGTGAAGGAGAGCATCACCAGGAAGAGACATGCTCCATCCATTGCTACTGTGGGCAGCACCTGTAACCTCAACCTCAAAATACCAGGTAATTGGTTCCAGATGGTGTCGGCCCAGGAGCGGCATACGCGCACGTTCACGCGTAGCAGTCACACGTACACGCGAACGGAGTGCACAGAGATTAGTAAGACAAGGGCGGGGGAGACCAAGCGGGAGGTGCGCGTGGAGGAGAGTACCCAGGTCGGGGGAGACCCCTTCAGGGACGTGTTTGGAGAGTTCCTGGGGAGTCAGAGTCTCACAGGCTTCAGTGGGATACCAGCCACTACCAGACAGTCtcaagagggtgtgtgtgtgacacaagaGGgtGACCAGGGGACCCAGGAGATGACGGCCCAGGTGACCAGTCCGGGGGGTAAGACGGAGGACGCAGAGATCATCGACGGCGAGGACAGCACCTACAGCGTCCGCTTCATCCCCCAGGAGATGGGTCCCCACACGGTCAACGTCAAGTACCGGGGCCAGCACGTCCCCGGGAGCCCCTTCCAGTTCACTGTGGGGcccctgggagagggaggggcaCACAAGGTTCGGGCTGGGGGCACGGGGCTGGATAGAGGAGTGGCAGGAGTGGCAGcTGAGTTTAGTATCTGGACCAGAGAGGCTGGAGCAGGGGGTCTGTCCATCGCTGTAGAGGGGCCCAGTAAGGCAGAGATCAGCTTTGAAGACAGGAAGGATGGATCCTGTGGAGTGGCCTATGTGGTGCAGGAGCCGGgtgaCTATGAGGTGTCCATTAAGTTTAATGATGAGCACATCCCAGACAGTCCCTTTATAGTCCCCATTGCCACTCTGTCTGATAACGCACGCCGCCTTACAGTCACCAGCCTACAGGAGATGGGATTGAAGGTGGGCCAGGAGGCGTCGTTCGCGGTGCAGTTGAACGGGGCGAGGGGGTTGATAGATGCTAAGGTTCACACCCCGTCCGGAGCTGTAGAGGAGTGTTATGTTACTGAGCTGGACAGCGACCAGCACGCCATCCGGTTTATCCCGAGGGAGAACGGAGTCCACTCTATCGAAGTGCGTTTCAACGGGAGCCACATTCCCGGTAGTCCCTTCAAGATCCGTGTGGGAGAGATCGGACAGGTCGGAGACCCGGGAATGGTGTCTGCCTTCGGACCTGGGCTGGAAGGAGGAACCACAGGCGTGGCATCAGATTTTGTAGTGAACACGTGTAATGCAGGGTCGGgtgctctgtcagtgaccattgatGGGCCGTCCAAGGTCAAGATGGACTGTCAGGATTGTCCCGAGGGTTACAAGGTCACTTACACACCCATGGCCCCCGGCAGCTATCTCATCACCATCAAATACGGAGGACCATCCCACATCGTAGGCAGCCCCTTCAAGGCTAAAGTCACAGgtgctCGTCTCTCTGGTGGTCACAGTCTACATGAAACCTCGTCCGTACTTGTGGAGACAGTAACCAAGTCGTTGTCGTCGTCATCGTCGATGGGCGTGGCCTATGGCCCTAAGTTCTCTTCGGATGCCAGTAAGGTGGTCTCACGGGGCGCCGGCCTATCAAAGGCCTTTGTAGGGCAGAAGAACACCTTCACAGTGGACTGCAGCAATGCAGGAACTAACATGTTGATGGTGGGGGTACATGGACCCAAGACCCCGTGTGAAGAGGTCTATGTTAAACATCTGGGCAACAGGATGTACAACGTCACCTACACCGTCAAAGAACAGGGCAACTACATCCTCATCGTCAAATGGGGGGATGAAAATGTCCCCGGCAGCCCCTTCCATGTCACCGTCCCCTAAGACTCATCCATCCCCTGTACAACCCCCTGCTGTATCCCAGAATGGACTAGTCCAACACCCCCACAGACACACTAAAGATGCAAAGACTTGTTCAGTCTGTccggagggtggggtgggggggggggggtaatttacCCATCATGCATTGTGCCACATTTCTCTGATAACTCATCCAGGCGACATCACAAAATCTGAGGTGCCAATCATCCTATGTCTGTGCCGTCCCACCAACTAGCCACCCTGTTGCTGTTTACTTTCAATGAGAGGGAATGTACAAAGAGGTCAAATCATGTTTTCTGTCTGTATCAGCCTATGCTAGTATTTTCAGAGTACAAACACAGTATGCAGTCACTACCATGTGCTTTTTAGCCAGTCCCCCAATGGTGTCCCACACTGCCTGTACTGGCCTGGTCAAAATGGCTGCCTTACATGAGGGAAGATGGCTGTGACGTCACTGTCTGGgtcactgacagacagagaggagttatttacctttatttattcaGTCCTTTTATTTTCTTTGACAGAAAATAGTCTTATATTGTTTCAAAGCAGAAGATTTCTGTCCATTTTAGAAACTATTCTCCCTCATATCGGGCCGTCCTGTGTCATTACGGGTGTTACCATGGACAAAGAGATGTGGTTGGCCAACTATTTTGTACTGAGGAAGAGGGTACGGCGTAGCAATCGGTTTATCGTGTGAATGTTTAATTAAGAAGTTCACAGAGAGATGTTACAGTGGAACAGCATCATAGAGTGACATTTTATAGTGATTTTATATGTAAGAAAAAAACTCTTCATTGTTTGATATACTAACCTTCTGTTTGGCAAGGATGTGCAGCCATAATAAAACGTTTAACTGCTGACCTACCACTGAAAACCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1492809 lncRNA downstream 3424 54875988 ~ 54876216 (-) True G1308517
TU1492808 lncRNA downstream 4043 54875396 ~ 54875597 (-) True G1308516
TU1492150 lncRNA downstream 15232 54864150 ~ 54864408 (-) True G1307996
TU1492121 lncRNA downstream 36130 54843301 ~ 54843510 (-) True G1307967
TU1492101 lncRNA downstream 55449 54823990 ~ 54824191 (-) True G1307947
TU1492876 lncRNA upstream 63594 55027742 ~ 55035464 (-) True G1308578
TU1492891 lncRNA upstream 81614 55045762 ~ 55045986 (-) True G1308592
TU1492892 lncRNA upstream 85959 55050107 ~ 55050321 (-) True G1308593
TU1492907 lncRNA upstream 108444 55072592 ~ 55072811 (-) True G1308608
TU1492939 lncRNA upstream 172412 55136560 ~ 55138293 (-) True LOC110490754
XM_021563659.2 mRNA downstream 279762 54597626 ~ 54599878 (-) True LOC110490331
XM_036944642.1 mRNA downstream 460544 54411303 ~ 54419096 (-) False LOC110490332
XM_021563654.2 mRNA downstream 498794 54374625 ~ 54380846 (-) True LOC110490329
XM_036944638.1 mRNA downstream 508115 54305008 ~ 54371525 (-) True LOC110490750
XM_036944639.1 mRNA downstream 508116 54305008 ~ 54371524 (-) False LOC110490750
XM_036944654.1 mRNA upstream 5295 54969443 ~ 55017031 (-) False LOC110490333
XM_036944655.1 mRNA upstream 5295 54969443 ~ 55017031 (-) False LOC110490333
XR_005036129.1 mRNA upstream 8628 54972776 ~ 55017031 (-) True LOC110490333
XM_036944658.1 mRNA upstream 75853 55040001 ~ 55053860 (-) False LOC110490752
XM_036944656.1 mRNA upstream 75853 55040001 ~ 55053870 (-) False LOC110490752
TU1492053 other downstream 111218 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 729100 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 957512 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1122292 53756515 ~ 53757348 (-) True efcab6
TU1490121 other downstream 1817360 53060964 ~ 53062280 (-) True G1306232
TU1492936 other upstream 184627 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 454175 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 592084 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 782137 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 1090343 56054491 ~ 56055064 (-) True G1309187

Expression Profile