RNA id: XM_036944657.1


Basic Information

Item Value
RNA id XM_036944657.1
length 2504
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110490752
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55040001 ~ 55053870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taatataaaataaaatggtgGACGCGCGGATTTTTTGAAAGGGCTCCAAAGTTTATCAACACATATTACATGTTTATAAATTTGGGACACCTTTGTCTTTTGTGAATCAACGCCTACAGTGATTGGGAGCCATGGACACAGTGGAGACTCGATTCACCCATTTGTTGCAGCCTATCCGGGAGCTCACGAAAAACTGGGACATTGATGTGGCCTCGGAGTTGGCAGATTATCTAGAGGAGTTGGATGAGATGTGAATCTCGTTCGACGGGGGCAAAACCACTCTTAACTTTGCAGAGGCAGCGCTGCTCATACAAGGCTCAGCATGCATTTACAGCAAGAAGGTGGAGCATTTGTACAACCTGGTGTACCAAACTCTGGACTACATCAATGACAGAAACAAGaaGGGAGCCATGGACACAGTGGAGACTCGATTCACCCATTTGTTGCAGCCTATCCGGGAGCTCACGAAAAACTGGGACATTGATGTGGCCTCGGAGTTGGCAGATTATCTAGAGGAGTTGGATGAGATGTGAATCTCGTTCGACGGGGGCAAAACCACTCTTAACTTTGCAGAGGCAGCGCTGCTCATACAAGGCTCAGCATGCATTTACAGCAAGAAGGTGGAGCATTTGTACAACCTGGTGTACCAAACTCTGGACTACATCAATGACAGAAACAAGaaGAAAGATAAACGAGCAGTGACATCTGGAGAGGATGACACGGATGGGGCCTCCTCCAACAATGCTAATGATGATGACGGCGGGTTTGACTCCTTAGACCAGGATACAACAGATGTCTCACTGCAGTCAGAGATGAAGAACGAGGCCAACACAAATGTGGACGTGGCCCCTCTTCCCCCCGAGTCTCTGATTCCTCCTGAGgcgtttgagaaacagaagctGCTTCTCATCAGTCTGAAAGGAGAGGTGCTGGGCAGCTGTAAGGACTTCAGGATGAACACGTTCACTCCGGACACCCTGGGTATCATCCGCCTCTTCctggcctcctctctgtcccactTCCTCAGGGACGCCCTGTCTGACGCACCCCTGGTCCCCGTCACCCTGTTCGGGCACCATGATGACGCAGAGCTTGCAGCAGGGGATGCCATGTCGGGCGTTGCCAGGGACGATGGTGCTGATGCCGGTGCGGAGAACTTCCTGACCCTGGAGGACAAAGGAATGGAGATGGACCAGGGACCTGAGGAACATATTGACAGACACCAGGACCCCAGTGAAGGGAGGCTgttgagggagaggggaggagtccAGCAGCTCTCTGAGGAGGAGCAGAAGaaacagaggaaggaggaggagagggcccaGACGGCAAACATGTGgaggttacatgacctTTATGATACAGTCGGCGAGGACAAGCCTCTGAAAACAGGAAGATGTTACAAGGTTCCTCCGGGTTTGGATGATTCTGGGAAGCGGAAAAGGAAAGGCCTCTCTGCGCTGCAAGACTTCTGGACCTGGTACACTGGCACCTATGACCCCCATGAACCCAGGCTAAAGAATGGACCCACGTATACAGACTTGAACTACATCTATATGAGTCAAATGAAAGACAAGCTGAAGACCCGGAAGAGGATTCTTGGAAAAACAggtgtgtttgtgtctgacgAGGAGCTGAGAAGGACGTATCTGCAGCTggacgagagagaagagagggaggaggagttaGAGGGCCTCAGACACCACGACCTGCTAGGCCTGCTCGATGACCTCTCTGACAACGAACATGACCCTTTGACTGATGAAGCCCCGGCTGACTTCCTGAGTGGACAGGACTTCGTACCAGGGGCAGACATGGACGGACTGAGTTACGAAGACCTGGTGAAGAAGAGTGTGGAGCAGTTCCTAGTGAACTCCCAGGGTTATGCCCAGGAGACGGCGCTGTCGAAAAGAGTGAAGGAATGGGAGGATAAAATACGACCGGAACTCACCTATCAGGAGGTGCGTGCTACCTTTGACATCCATGACTATGGGGACAGGATCGTAGCGGCTTTGAGCAGTGTGGGCCAGAGGAGGACCTTCTCCTCTATAGTCCACGGCATGGACAACTTCGAGGCCTGCAAGTACATGTTGGCTTCCCTTCaactgGCCAACGACTACACAGTGGAGATCGACAGGAGTGAGGGTCTCGAGGAAAGCATTGACACCATGGGACTCACTCTGCTCAGCAAACACCGGGCCAACCAACGATTCAAGAAAGCCCCTGCAGCAACCTCCGACCCTATATGACCCAGACATCTCatgatcttgtgtgtgtgtgtgtgtgtgtgtgtgctcttgccTCCTACTGACTCCGTGGGGACTAGAGACCCATTACTCTGAAACGTGGTACGCACTCCTGTGTGTGACACCACTTGTGCCTACCGGACCACTGGTACTGACCTGCTCTATCAACAACCTGGCTGCACCTATTCTCTCCTCACGTACTTGCTCTTTAATTTCAACCCCCTGTCTATTGTTTGATCTAaggtgtctctgtcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1492876 lncRNA downstream 4537 55027742 ~ 55035464 (-) True G1308578
TU1492809 lncRNA downstream 163785 54875988 ~ 54876216 (-) True G1308517
TU1492808 lncRNA downstream 164404 54875396 ~ 54875597 (-) True G1308516
TU1492150 lncRNA downstream 175593 54864150 ~ 54864408 (-) True G1307996
TU1492121 lncRNA downstream 196491 54843301 ~ 54843510 (-) True G1307967
TU1492907 lncRNA upstream 18722 55072592 ~ 55072811 (-) True G1308608
TU1492939 lncRNA upstream 82690 55136560 ~ 55138293 (-) True LOC110490754
TU1492941 lncRNA upstream 102051 55155921 ~ 55156228 (-) True G1308637
TU1492993 lncRNA upstream 181641 55235511 ~ 55235761 (-) True G1308681
TU1492994 lncRNA upstream 182069 55235939 ~ 55236208 (-) True G1308682
XM_036944654.1 mRNA downstream 22970 54969443 ~ 55017031 (-) False LOC110490333
XM_036944655.1 mRNA downstream 22970 54969443 ~ 55017031 (-) False LOC110490333
XR_005036129.1 mRNA downstream 22970 54972776 ~ 55017031 (-) True LOC110490333
XM_036944643.1 mRNA downstream 75853 54879640 ~ 54964148 (-) False LOC110490751
LOC110490754 mRNA upstream 84049 55137919 ~ 55147893 (-) False LOC110490754
XM_021563666.2 mRNA upstream 94890 55148760 ~ 55155353 (-) False LOC110490337
XM_021563667.2 mRNA upstream 94890 55148760 ~ 55155353 (-) False LOC110490337
XM_021563668.2 mRNA upstream 117047 55170917 ~ 55217377 (-) True LOC110490338
XM_036944664.1 mRNA upstream 175034 55228904 ~ 55232099 (-) False LOC110490755
TU1492053 other downstream 271579 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 889461 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1117873 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1282653 53756515 ~ 53757348 (-) True efcab6
TU1490121 other downstream 1977721 53060964 ~ 53062280 (-) True G1306232
TU1492936 other upstream 94905 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 364453 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 502362 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 692415 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 1000621 56054491 ~ 56055064 (-) True G1309187

Expression Profile