RNA id: TU1492939


Basic Information

Item Value
RNA id TU1492939
length 1364
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110490754
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55136560 ~ 55147893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtgtacatgaccaataaacTTTTGATTTGATAGGTGTTAGCAATATGGTAGAGGTCACTGCTCCATCCCTTTCTGTCCCTTCTCATCCTCTTTCTCCCCACCCCACTCTTTCTCTCAGGAGGAGCAGCACCAGAGAGGGTTATCACTGCTGCGTCGGAGGCTGGAGGAGGTAGCCTGTACTCAGAAGCAGCAGCAGATGGAGGAACTGGGGCCTCCCATGGACAGGGGCTCTGGCCTGCACGACTCTCTCCCTGAACTCTGACCTCTCCACACTGACCCCACCCCCCCAGAGAGTGAGCGTGACCTTCGCTGTAGGATTTATTACTCCCTAGAAGTGATGTTTTAATTTAAGTGAGCTCTCAAATATTTTGTGAACCATTTTATTGGCACAAAACATATCAAATGAAAAGAGAAAGAACTACATGGATTCAATGTTTACGTGCCTTGGTGAGTAACGGTGCTGGAGTCCTTCCcagaacatgcaaactgctttttatactgttcaacataccttgtgtcaattgaagcttatcctcaatactgacaaaactaaactaatggtgttttctaatgcaagaaatagacctcaacctttcacctattactacctgtcagggcaaggagattgaggttgtaacctcataaatATCTTGATAATGGCCTCTcttttttaaattgcatattcaacatcttacaaaaaaatgaaagctgaaattgggattttattttaggaataaggcctggcTTTTGAAGCCAGGAGGCTAGTATCAgttacatttatgcctttactagactgtggggatattttatatatgaatgcttccgctcagtgtttgagatcatttGACACtatttaccatggcactttgagatttattttaaactgcaaaactcttacgcaccactgcactttgtataccagggttggctggccttctctagtcactcgtaggctcagtcactggtatacttttatttacaaagccattttatttgggcatttttattgttcagaaatgtggtgggtactctctttgtTCGCAGGACTTTATCCTGCTGACTGTTCCAAacgtccgaactgaatttggtaaaagggttTTTATGTACTCTGCTCcgtcgtcttggaacaccttacaaaatacttttaaactggaagaacttcaATCAcagatgaaggattttgaggctgattccctgacctttcagtgtttttaatttgctgttttatacttgTGTGAAGTccatggtttttactagattacttgtctgtctgtaatttttttgtaatgactcggtgctgcctatcttggccagggtgctcttgaaaaagagattttaatctcaatgagcccttcctggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1492907 lncRNA downstream 63749 55072592 ~ 55072811 (-) True G1308608
TU1492892 lncRNA downstream 86239 55050107 ~ 55050321 (-) True G1308593
TU1492891 lncRNA downstream 90574 55045762 ~ 55045986 (-) True G1308592
TU1492876 lncRNA downstream 101096 55027742 ~ 55035464 (-) True G1308578
TU1492809 lncRNA downstream 260344 54875988 ~ 54876216 (-) True G1308517
TU1492941 lncRNA upstream 17628 55155921 ~ 55156228 (-) True G1308637
TU1492993 lncRNA upstream 97218 55235511 ~ 55235761 (-) True G1308681
TU1492994 lncRNA upstream 97646 55235939 ~ 55236208 (-) True G1308682
TU1492996 lncRNA upstream 102320 55240613 ~ 55242374 (-) True G1308683
TU1493008 lncRNA upstream 124645 55262938 ~ 55265996 (-) True LOC110490344
XM_036944656.1 mRNA downstream 82690 55040001 ~ 55053870 (-) False LOC110490752
XM_036944657.1 mRNA downstream 82690 55040001 ~ 55053870 (-) False LOC110490752
XM_036944659.1 mRNA downstream 82690 55040001 ~ 55053870 (-) False LOC110490752
XM_036944660.1 mRNA downstream 82690 55040001 ~ 55053870 (-) True LOC110490752
XM_036944658.1 mRNA downstream 82700 55040001 ~ 55053860 (-) False LOC110490752
XM_021563666.2 mRNA upstream 10467 55148760 ~ 55155353 (-) False LOC110490337
XM_021563667.2 mRNA upstream 10467 55148760 ~ 55155353 (-) False LOC110490337
XM_021563668.2 mRNA upstream 32624 55170917 ~ 55217377 (-) True LOC110490338
XM_036944664.1 mRNA upstream 90611 55228904 ~ 55232099 (-) False LOC110490755
XM_036944665.1 mRNA upstream 90611 55228904 ~ 55232100 (-) False LOC110490755
TU1492053 other downstream 368138 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 986020 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1214432 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1379212 53756515 ~ 53757348 (-) True efcab6
TU1490121 other downstream 2074280 53060964 ~ 53062280 (-) True G1306232
TU1492936 other upstream 10482 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 280030 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 417939 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 607992 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 916198 56054491 ~ 56055064 (-) True G1309187

Expression Profile