RNA id: TCONS_00043840


Basic Information

Item Value
RNA id TCONS_00043840
length 3441
RNA type mRNA
GC content 0.52
exon number 22
gene id XLOC_022206
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13940958 ~ 14059085 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCTGGATCAACGGCTTCCTAGTGGCCAGAGTGGATGACCGAAAGACCGCGTGGGGCGAGCGCAATGGCAAGAAGTCCAAGCGCAAGGTTGGCTCCTCTCTCTGCAACCCACGCTACATGAGCTGCCTGCGGGACGTGGAAGCCATGGAGCCTCCTCCCCAGCCGCCCCACGCTCAGGAAGACCACTATGGCAAAATGGGAAGCGGGGGGGAGGGTGATGGCGATGTTAAAGGGCGGAAAAGGGACGGTTTGGGTGGTGACGGCTCCAGCGAGGACACCGCCAGTGGTACGGGGTCAGTAACAGCTGCCGACTGCTGGCAGCGGGTGGTTCGCGTTTTCCAATCCAAGAAGTTCCAGTCGCGCAAACTGGAGCGTCTCTACCAGCGCTACTTCTTCAGGCTTAACCAGAGTTCGCTAACAATGCTAATGGGCGTTTTGGTGATCGTCTGCGGGGTCATGCTCACCTTCCACTGCATTCATGGCCCACCAGACGTAGTTTACGCTTCAGTTTTGTCTGTGGCCATGGCCTTGTTTTTGGCACTTATGGTGGTGTGCAATCGAAATGGCTTCCACCAGGACTACATGTGGATGGTCAGCTATCTGGTCATTGGAGTGCTAATTATAGTGCAGGTATTCGGGGTGCTAATGGTGGCTCCCCGCAGTGCCTCGGAGGGGATCTGGTGGTCCGTCTTCTTCATCTACATTATCTATACGCTGCTGCCGGTGCGGATGAGAGCGGCGGTGCTCAGCGGAGGAGTGCTGTCAGCTATACACCTCCTCACCACATGGAGGATCAATCAGGACGATGAGTTCCTCTGGAAACAGCTAAGCGCAAACGTGTTGATCTTCCTGTGCACCAACATCATTGGGATCTGCACACATTACCCAGCAGAGGTGTCTCAGAGACAGGCCTTTCAGGAGACACGTGGATACATCCAGGCCCGACTGCACCTGCAGAGAGAAAACCAGCAGCAGGAGCGCCTGTTGCTGTCTGTCTTGCCGAGGCATGTTGCCATGGAGATGAAGGCTGACATCAACGCTAAAAAAGAAGACATGATGTTTCACAAGATCTACATCCAGAAGCACGACAATGTCAGtATTCTGTTTGCAGACATCGAGGGATTCACTAGTCTGGCGTCTCAGTGCACTGCTCAGGAGCTGGTCATGACTCTAAACGAGCTGTTCGCCCGCTTTGACAAACTAGCATCGgagaacCACTGCTTGCGGATCAAGATTCTAGGGGATTGTTATTACTGTGTGTCTGGTTTGCCGGAGCCCAGAGCAGATCATGCTCACTGCTGTGTGGAGATGGGGGTCGACATGATCGAAGCCATTTCTCTGGTGCGAGAGGTGACGGGGGTGAACGTGAACATGCGGGTGGGTATTCACAGCGGTCGTGTTCACTGTGGTGTTCTTGGATTGAGAAAATGGCAATTCGATGTGTGGTCCAACGACGTAACACTCGCCAACCACATGGAAGCTGGAGGCAAAGCTGGGAGGATCCACATCACTAAAGCGACTCTACAGTACCTGAATGGAGACTATGAGGTGGAGCCGGGTTTCGGAGGGGAGAGAAACGCATACCTGAAGGAGAACAGCATTGAGACGTTCCTCGTGCTGGGCTGCAGTCAGAAGAGGAAAGACGAGAAGGCCATGATGGCCAAGATGCAGCGCACGAGGACCAACTCTAATGAAGCTCTGGTGCCGCGGTGGGTGCCCGACAGATCCTTCTCCAGGACCAAAGACTCCAAAGTCTTCAGACAGATGGGCATTGATGAAACCTCCAGCAAAGACAACCGTGGTGCTCAGGAGGCGTTGAACCCCGAGGATGAGGTCGATGAGTTTTTGGGTCGTGCCATCGACGCTCGCAGTATTGACCAGCTCCGCAAAGACCATGTCAAGAAGTTCCTCCTCACCTTCCAAACCTCCAGCCTGGAGAAGAAGTATGCTAAGAAGGTTGATGATCGTTTTGGTGGTTACGTGGCCTGTACGCTCCTGGTCTTCTGTTTCATCTCTTTTATCCAGATCGTCGTATTCCCTCATACTCTGGTCATGCTGGGAATTTACATCAGTATCTTCATCATTCTTGCCAACATCCTCTTTATCTGTGCCATTTACTCCTGTGTGAAGCTCTTCCCCGCTGCCATGCAAACTGTGTCCAAGAAGATTGTTCAGTCTCGCACCAACAGCACACTGGTGGGAGTTTTCACCATCATCCTCGTCTTCATCTCTGCCTTTGTCAATATGTTTTCCTGTGATACGCAGAAGCTGGTGGACTGTGTGGCAAAGCAGTTGAACTGGTCTTCAGAGATGGTGACTCCTTGTATCATTCACAATATGTCTCGATCTGTAGCCGATGGCCTGAGTATTTGTCCCAACAACACTCCTTCCTGCCCTTTTCCTGAGTATTTCAGCTACAGTGTGCTGCTGACGCTGCTGGCCTGCTCAGTGTTTCTGCAGATCAGTAGTATAGGGAAGCTGGCTTTAATGCTGCTCATCCAGCTCACCTTCCTGCTGCTTGTGGAGTGGCCAGAGGTGGCGCTGTTCGACAACGCAGACCTCTTCGTCACTGCCAATGCCCTCACTTTCAGGGTGACTAAAGTGTCCCTAAAGGTCATGACCCCAGTGATCCTCACTGTATTTGTACTAGCACTGTACCTACATGCCCAGCAAGTGGAGTCAACAGCCCGTCTAGACTTCCTTTGGAAGCTTCAGGCCACAGAAGAGAAGGAGGAGATGGAGGAACTTCAAGCCTACAACCGCCGGCTACTCCACAACATCCTGCCCAAAGACGTGGCTGCGCACTTTCTGGCCCGAGAGCGAAGGAATGACGAGCTATATTATCAGTCGTGCGAGTGTGTGGCCGTCATGTTCGCCTCCATTAGCAATTTCTCTGAGTTCTACGTGGAGCTGGAGGCCAATAACGAGGGAGTGGAGTGTCTGAGGCTCCTCAATGAGATCATCGCTGACTTTGATGAGATCATCAGTGAAGAGAAGTACAGGCAGCTGGAGAAAATAAAGACCATTGGCAGCACCTACATGGCCGCATCAGGCCTCAATGACTCCACATATGACAAGGAAGGCCGTTCGCATATAACAGCGTTGGCTGACTACGCCATGCACCTCCGCGAACAGATGAAATACATCAATGAGCATTCCTTCAACAACTTCCAGATGAAGATCGgACTGAACATTGGGCCAGTGGTCGCAGGTGTTATTGGAGCCAGGAAGCCCCAGTATGATATTTGGGGAAACACAGTAAACGTGGCCAGTCGGATGGACAGTACGGGAGTCCCAGACCGTATTCAGGTGACCACAGATCTACACCAGGTGTTGCACAGTAAAGGTTACCAGCTGGAGTGTCGAGGGGTCATAAAGGTGAAGGGTAAGGGTGAAATGACCACTTACTTCCTGAACGACGGACCTCCCAACAGTTAG

Function

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0022011 myelination in peripheral nervous system biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060221-1 Predicted to enable adenylate cyclase activity. Acts upstream of or within myelination in peripheral nervous system. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human ADCY6 (adenylate cyclase 6).

Ensembl:

ensembl_id ENSDART00000154908

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044971 lncRNA downstream 117026 13818507 ~ 13824192 (-) True XLOC_022203
TCONS_00044970 lncRNA downstream 131621 13806359 ~ 13809597 (-) True XLOC_022202
TCONS_00044969 lncRNA downstream 315633 13623519 ~ 13625585 (-) True XLOC_022199
TCONS_00044968 lncRNA downstream 375609 13561718 ~ 13565609 (-) True XLOC_022198
TCONS_00043830 lncRNA downstream 375867 13561718 ~ 13565351 (-) False XLOC_022198
TCONS_00043844 lncRNA upstream 350697 14407888 ~ 14415213 (-) True XLOC_022210
TCONS_00044972 lncRNA upstream 517307 14574498 ~ 14583539 (-) True XLOC_022211
TCONS_00044973 lncRNA upstream 678144 14735335 ~ 14738386 (-) True XLOC_022212
TCONS_00043849 lncRNA upstream 762216 14819407 ~ 14825434 (-) False XLOC_022214
TCONS_00043852 lncRNA upstream 775941 14833132 ~ 14846838 (-) False XLOC_022214
TCONS_00043836 mRNA downstream 63320 13844920 ~ 13877898 (-) False XLOC_022205
TCONS_00043835 mRNA downstream 65966 13842982 ~ 13875252 (-) False XLOC_022205
TCONS_00043834 mRNA downstream 65966 13842982 ~ 13875252 (-) False XLOC_022205
TCONS_00043833 mRNA downstream 100785 13832347 ~ 13840433 (-) True XLOC_022204
TCONS_00043829 mRNA downstream 645295 13289083 ~ 13295923 (-) True XLOC_022197
TCONS_00043842 mRNA upstream 136356 14193547 ~ 14216506 (-) True XLOC_022208
TCONS_00043843 mRNA upstream 207931 14265122 ~ 14403939 (-) True XLOC_022209
TCONS_00043845 mRNA upstream 685896 14743087 ~ 14769523 (-) False XLOC_022213
TCONS_00043846 mRNA upstream 686264 14743455 ~ 14766902 (-) True XLOC_022213
TCONS_00043847 mRNA upstream 751030 14808221 ~ 14830627 (-) False XLOC_022214
TCONS_00043838 other downstream 66618 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043837 other downstream 83701 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043832 other downstream 226718 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043831 other downstream 305311 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043813 other downstream 1872984 12068120 ~ 12068234 (-) True XLOC_022187
TCONS_00043855 other upstream 776472 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043860 other upstream 944168 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043863 other upstream 1050657 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043872 other upstream 1888963 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 2504042 16561233 ~ 16562161 (-) True XLOC_022227

Expression Profile

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