RNA id: XM_021563680.2


Basic Information

Item Value
RNA id XM_021563680.2
length 1977
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110490346
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55332272 ~ 55342699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAGGGGAACTATTATGTGGTTGGACTCACTTCCGGTAAATCATTTGCAGTATGAAGAAGGAGCAAGTTGTAAATTGTCAGTTTTCGGTCTGGTATCCGATATTTAAGAAGCATACTATCAAAAGTTTGATTCTCCCACTGCCTCAGAATGTAATAGATTATTTGCTGGACGATGGAACACTAGTAGTTTCTGGAGGGGACAACAACACTCAGCATAATCAGACCAACAACAGTGACTCAGAGGAGGAAGACATTCAGTGGTCAGATGATGAGACAACCACCACTGTAACAGCTCCAGAGTTTCCAGAATTCAACTCTAAAGTGCTGAAGGCCATCAACACCCTAGGTGGGTGTGTCTTTCCCAAACTGAACTGGAGTGCACCGCGGGATGCTAACTGGATTGCTCTGAACAGCTCCCTGCAGTGTCAGAGTCTGAGCGATATTTTCCTGCTCTTCAAGAGCTCTGACTTCATCACCCACGACCTCACACAGCCATTCCTTCACAGCAGTGACGAGGATTCTCCAAATCCAGCCATAAACTATGAGCTGGTCCTGAGGAAGTGGAGTGAGCTGCTACCTGGTGGGGAGTTCAGGTGTTTCATCAAAGAGAACAAGCTGATTGGTATCTCCCAGAGAGACTATACCCAGTACTACCACCACATCTCTAAGCAGGAAGCCCAGATCTGCCACTCCATCCAGGAGTTCTTCAGCCAACACGTCCAGTATCAGTTCCTGGATGAGGACTTTGTGTTGGATGTCTACAGAGATAGCTGGggGAAGGTGTGGCTGATCGATCTCAACCCCTTTGGTGAGGTGACAGATTCACTGCTGTTCACGTGGGAGGAGCTTACCTCCGGGAACAGCCTGTCAGCCAATCAAGAGGAGGGTGACACAGCCCAGCAGGAAGCTCCTGTGTTCCGCTACACCACCAGTGATGTGACGGTGCAGCCCAGTCCCTGTCTGAGCTACCGGATCCCTAGGGACTTTGTGGACCTCTCCACTGGCGAGGACGCATACAAACTCATCGACTTCCTCAAACTGAAGAAACGCCAGCAAGAGGACtctgaggaagaggtggaggaagaggtacGACAGTGACAGCCCCTGAGGAGCAGGGTCTCTACACGGTGACTGTTCCCTCAGACTGTTAGCCTAGCATAACAATAACCCTAAAACTGTAAGGCTAGCGTTAGCGGTTAGCACAGAGACCACTATACACATGGAGGTTTGTCCTTATCAGCTCTTGAATCTTCTGATGGaatccatatacttttggtcatcaCCTTAGACCAATCCAGAATGCTGCAGATATAAATGTTTTGAATAGAACAAACAACAAACCATAATGAGGAGAAAAGCATCATGACCGCTCTATGCGGTACATTTCTACCTGCAACACTGTAAAAGTCCCATTAAATCTCATGGTTGTGTGTATTTAAGAGGGGAGTTCTAAGCAGTGCCCCTGTTCTATTGGCCCGGTGTGTCtaatgtaaatataaatactgTAACTTAACATTGTGTAAAGGTAAAGGGGAGTCTGTTACAGGAGTCTGTGTATAGGAATAAAGAATGCTCAAATTTATAATACAGTCCTGGGGAAGAGACGTGTCTTAGTTTGTGTGTATAGCAGGTACATCATGGGATTGCAATTTCTGAGGGAGATACCCAAAGGGTCAGAGTTTTCTGACTTAATCCACTGGACTTTCTCTCTTCACACACACCAAATGCACACTTTTCCATGTACTTTCTGATGGTTTCGTTAGACACACATCTGTATGTAATAGCAATACAAAGGTTTACTCATGAAGTCTCTGTGAAACAGTATTTCAAACATTCCAGTTCCTTACTTACTCTCTCTGGTCGTTATAGCTCTATGTTATTGTAGAATTAGTTTTGATTCTTATCATTGGTTTATTTTCTATGTGCTGGCAAAGAGAGGTGTTCTGATTGGGTAATAAATTGCTGGTGTGTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493054 lncRNA downstream 902 55331145 ~ 55331370 (-) True G1308734
TU1493051 lncRNA downstream 5543 55325910 ~ 55326729 (-) True G1308731
TU1493048 lncRNA downstream 13617 55318420 ~ 55318655 (-) True G1308728
TU1493047 lncRNA downstream 14347 55317640 ~ 55317925 (-) True G1308727
TU1493043 lncRNA downstream 18037 55314029 ~ 55314235 (-) True G1308723
TU1493072 lncRNA upstream 10935 55353634 ~ 55355247 (-) True G1308744
TU1493070 lncRNA upstream 12973 55355672 ~ 55357072 (-) False LOC110490348
TU1493069 lncRNA upstream 13047 55355746 ~ 55357206 (-) False LOC110490348
TU1493071 lncRNA upstream 13047 55355746 ~ 55357072 (-) False LOC110490348
TU1493073 lncRNA upstream 14640 55357339 ~ 55357788 (-) True LOC110490348
XM_036944671.1 mRNA downstream 1520 55262944 ~ 55330752 (-) False LOC110490344
XM_036944667.1 mRNA downstream 81168 55236654 ~ 55251104 (-) True LOC110490341
XM_021563674.2 mRNA downstream 81283 55236654 ~ 55250989 (-) False LOC110490341
XM_036944669.1 mRNA downstream 81283 55236654 ~ 55250989 (-) False LOC110490341
XM_036944668.1 mRNA downstream 81546 55236654 ~ 55250726 (-) False LOC110490341
XM_036944677.1 mRNA upstream 14415 55357114 ~ 55374098 (-) False LOC110490348
XM_036944676.1 mRNA upstream 14415 55357114 ~ 55374104 (-) False LOC110490348
XR_005036132.1 mRNA upstream 28311 55371010 ~ 55372484 (-) True LOC118938816
XM_036944685.1 mRNA upstream 74470 55417169 ~ 55433292 (-) False LOC110490757
XM_036944682.1 mRNA upstream 74470 55417169 ~ 55435524 (-) False LOC110490757
TU1492936 other downstream 180161 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 563850 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1181732 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1410144 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1574924 53756515 ~ 53757348 (-) True efcab6
TU1493091 other upstream 75624 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 213533 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 403586 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 711792 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1629042 56971741 ~ 56973518 (-) True G1310261

Expression Profile